Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3488 ATGATACCAATAAAGTTTGTGAACAAATATGGAGAATGTTTACCAAAAGCTATATGTTTGAAGACTCCCAATGGTGCAGATTGGAAAATAAGTTTGGTAAAAAGTGATGGCAAAATATGGTTTGAAAAGGGTTGGAAAGACTTCGCAAACTATCATTCTCTATCTCATGGACATCTTCTGGTTTTCAAATATGAAAGAACTTCCCATTTTGAGGTAAGAGTCTTTGATAAGAGCGCTGTAGAGATAACCTATCCTTTCAAAAGAGTTGAAGCCAATAATAAAGAAGATTGTAGAGCAAGTCAAAAGAGAAAAGTTTACTCCTCCTTTGAAATTGGAAGCACTAGTTGTGTAAAAAAGTGCAAAGAAAAAATAGTGAATACAACACTTGAAAAAGCAAAAGAGTTAAAAACATGTAACCCCTCCTTCGTTATTGTCATGGGTGCATCGTACGTAGAACGCGGTTTTGTTTTGACTATACCTTCTATGTTTGGTAAGACACACTTTGATATGGACAAGAACAAAGGATATGTTTATTTGCAGGTATCAAATTATGAAAAAGTTTGGCCTGTGAAGTACAGAATTAGGATGTTAGCTGGACGACTAAGAGTTGAGCTCTTAGCTGGATGGATGAAATTCTCGAAGGACAATAATTTAAAAGTTGGAGATGTTTGCAACTTTGAATTCATTCTTAAAACTAATATGACTTTTCAAGTTCATATCTTTAGAAAGACAAACACGGATTGTTCAACATTGGCAAATTCTTCTCAAGTGAAAAGAGAAGCTGCTGCTCAAGGATAG 798 0.3471 MIPIKFVNKYGECLPKAICLKTPNGADWKISLVKSDGKIWFEKGWKDFANYHSLSHGHLLVFKYERTSHFEVRVFDKSAVEITYPFKRVEANNKEDCRASQKRKVYSSFEIGSTSCVKKCKEKIVNTTLEKAKELKTCNPSFVIVMGASYVERGFVLTIPSMFGKTHFDMDKNKGYVYLQVSNYEKVWPVKYRIRMLAGRLRVELLAGWMKFSKDNNLKVGDVCNFEFILKTNMTFQVHIFRKTNTDCSTLANSSQVKREAAAQG* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3488 265 PANTHER B3 DOMAIN-CONTAINING 126 243 - -
Psa3g3488 265 PANTHER B3 DOMAIN-CONTAINING 1 122 - -
Psa3g3488 265 Pfam B3 DNA binding domain 2 77 IPR003340 GO:0003677
Psa3g3488 265 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Psa3g3488 265 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 126 243 - -
Psa3g3488 265 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 122 - -
Psa3g3488 265 SUPERFAMILY DNA-binding pseudobarrel domain 136 244 IPR015300 -
Psa3g3488 265 SUPERFAMILY DNA-binding pseudobarrel domain 1 78 IPR015300 -
Psa3g3488 265 CDD B3_DNA 1 76 IPR003340 GO:0003677
Psa3g3488 265 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Psa3g3488 265 SMART B3_2 1 78 IPR003340 GO:0003677
Psa3g3488 265 SMART B3_2 142 244 IPR003340 GO:0003677
Psa3g3488 265 CDD B3_DNA 140 242 IPR003340 GO:0003677
Psa3g3488 265 Gene3D - 120 246 IPR015300 -
Psa3g3488 265 Gene3D - 1 79 IPR015300 -
Psa3g3488 265 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3488 Psa-Chr3 294205660 294206915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3488 2 95 B3 DNA Binding Superfamily AT1G49475 43.617 3.24e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa3g3488 B3 8.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3488 - - mtr:MTR_7g050580 305.064