Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3487 ATGATTCCATGTAAGTTTGTGGAGAAATATGGAAAAAATCTACCAAGAGATATTTATCTAAAGACTTCCAATGGTGAAAAATGGAAAATAAGTTTGGCAAAAAGTGGTGGCGAAATATGGTTTGGAAATGGTTGGAAAGAATTTGCAGAGTTTCATTCTCTATCTCATTACCATCTTCTAGTTTTCAGATATGAAAGAACTTCCCATTTTAAGGTACATATCTTTGATGAGCATGCTGTGGAGATAAACTACCCTCTCAAAAGAGTTGATGTCAACAATGAAGAAGATTGTAGAGCAAGTCAAAAGAGAAAAGCTTACTCCTCCTTTGAAATTGGAAGCACTAGTTGTGTCAAAGTTGGAAAATCGCAAAAGTGTAAAGGAAAACAAGTGAATGCAATTCTTGAAAGAGCAAAAGAATTCAAAACATGTAATCCATCCTTTGTTCTTGTCATGGGTGCATCTTATGTTGAACACCATTTTCTTTTGACTATACCTTCTAATTATGGCAAGACACACTTTGATATGGACAAGAAGAGAGGAAATATGTATTTTCAGGTTTCAAATGGCGAAAAAGTTTGGCCTGCAAAGTATGGAATTAGGATGCACTATAAAGGACAAATAAAGTTTGAACTCATAGCTGGATGGATGAAATTCTCAAAGGATAATAATTTGAAAGTTGGTGATGTTTGTAATTTTGAGCTCATTCTTAGGACTAACATGACCTTCCTTGTTCACATCTTTAGAAAGACAAATGAAGTCAACACAAATTGTTCAACTTCTCAAAGTTCATCCCACATGAAAAGAGAAGAAGCTGCTCATGGAAAGACAGAGAACGGGAATGAAAATCATCACATATCACCACCTGTGAAGAGTTTGTTCCGGTAG 885 0.3514 MIPCKFVEKYGKNLPRDIYLKTSNGEKWKISLAKSGGEIWFGNGWKEFAEFHSLSHYHLLVFRYERTSHFKVHIFDEHAVEINYPLKRVDVNNEEDCRASQKRKAYSSFEIGSTSCVKVGKSQKCKGKQVNAILERAKEFKTCNPSFVLVMGASYVEHHFLLTIPSNYGKTHFDMDKKRGNMYFQVSNGEKVWPAKYGIRMHYKGQIKFELIAGWMKFSKDNNLKVGDVCNFELILRTNMTFLVHIFRKTNEVNTNCSTSQSSSHMKREEAAHGKTENGNENHHISPPVKSLFR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3487 294 ProSiteProfiles B3 DNA-binding domain profile. 147 250 IPR003340 GO:0003677
Psa3g3487 294 Pfam B3 DNA binding domain 2 77 IPR003340 GO:0003677
Psa3g3487 294 Pfam B3 DNA binding domain 147 249 IPR003340 GO:0003677
Psa3g3487 294 Gene3D - 126 252 IPR015300 -
Psa3g3487 294 SUPERFAMILY DNA-binding pseudobarrel domain 143 250 IPR015300 -
Psa3g3487 294 SMART B3_2 147 250 IPR003340 GO:0003677
Psa3g3487 294 SMART B3_2 1 78 IPR003340 GO:0003677
Psa3g3487 294 MobiDBLite consensus disorder prediction 266 280 - -
Psa3g3487 294 SUPERFAMILY DNA-binding pseudobarrel domain 1 77 IPR015300 -
Psa3g3487 294 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Psa3g3487 294 MobiDBLite consensus disorder prediction 257 294 - -
Psa3g3487 294 PANTHER B3 DOMAIN-CONTAINING 118 249 - -
Psa3g3487 294 PANTHER B3 DOMAIN-CONTAINING 1 120 - -
Psa3g3487 294 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 120 - -
Psa3g3487 294 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 118 249 - -
Psa3g3487 294 CDD B3_DNA 1 76 IPR003340 GO:0003677
Psa3g3487 294 CDD B3_DNA 145 248 IPR003340 GO:0003677
Psa3g3487 294 Gene3D - 1 79 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3487 Psa-Chr3 294160390 294161518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3487 2 110 B3 DNA Binding Superfamily AT1G49475 43.119 8.75e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa3g3487 B3 7.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3487 - - mtr:MTR_7g050580 330.102