Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3486 ATGAATGGTTCAATATGGTCCATTTTCATGCATGCTGATACACAAGATTGGTTCCTTATGATTTTAGGTACCATTGGAGCTATTGGTGAAGGCTTTACTGCACCTTTGGTATTGATTCTTAATAGCCGCATGATTAATAATTATGGAAATTCATCTAACATTGATGGTAACACTTTCATCCATAATATCAATAAGAACGCAATGGCTTGGTTCTATTTGGCTTGTGCATGTTTTGTTGTTTGTTTCTTTGAGGGTTATTGTTGGACGAGGACAAGTGGAAGACAAGCTGCAAAAATGAGATGCAGATATTTGAAAGCAGTTCTTAGACAAGATGTTGCTTACTTTGATTTACAAGTCACAAGTACTTCCGAGATTATCACTAGCGTCTCCAACGATACTCTTTTAATTCAAGATATTCTTAGTGAAAAGGTTCCAAATTTCTTGATGAACATTTCATGGTTCATTGCAAGCTACATGATGCCTTTTATAATACTATGGAGAATGGCAATTGTAGCGTTACCATTTTGTATTATTCTAGTGATCCCTGGATTTATCTATGGCAAGACTTTGATGAGTTTATCGAGAAATATCAGAGAAGAGTATAATCAAGCTGGTACAGTTGCGGAACAAGCACTATCTTCTATCAGAACTGTTTATTCTTTTGTGGGGGAACAGAAGTCCATGAATGCTTTCTCTAAAGCTCTAGAAGGTACTGTGGAGTTGGGTTTAAAACAAGGATTAACGAAAGGTTTAGCCATTGGAAGCAATGGTTTTGTGTTTGCTATTTGGGCTCTCTTGTGCTATTATGGTAGCAAAATGGTCATGGATCATGGTGCTCAAGGAGGGACAGTTTTTGCAGTTGGAGCAAGCATAACGGTTGGTGGATTAGCATTAGGAGCTAGTTTGTCCAACTTGAAGTATTTCTCTGAAGCAATTTCGGCCGGTGAAAGAATCAAGAGAGTGATAGAAAGAGTTCCGAAGATAGATTCTAACAGCACAAAAGGAGAAATATTAGAAAATGTTTCCGGGGATGTGGAATTTGACAATGTAGAATTTTCATACCCAACAAGACCAGAAACCATTATCCTTAAAAAATTCTGTCTCAAGATTCCAGCAGGAAAAACAGTTGCATTGGTTGGTGAAAGTGGTTCAGGGAAATCGACAGTGGTATCATTGTTGCAGCGATTTTATGATCCTACTGGTGGAGAGATACGTCTTGATGGAGTTTCTATTCATAAATTAAATATTAAATGGCTTAGATCAATGATGGGTTTGGTTAGTCAAGAACCTGCTTTGTTTGCAACAAGCATTAAAGAGAATATAATGTTTGGTAAAGAAGATGCTACTGAAGATGAGATTGTTGAAGCTGCTCAAATTTGTAATGCTCATGATTTCATTTCATTGCTTCCTTCCGGTTACAATACTCAGGTAGGAGAAAGAGGGGTTCAACTATCAGGTGGACAAAAACAAAGGATAGCAATTGCAAGAGCAATAATTAAAAAACCACGAATCCTTCTTTTAGACGAAGCAACCAGTGCATTAGATACCGAGTCTGAACAACTTGTTCAACAAGCCCTCGACAATGCAACAACAGGTTGCACAGCTGTAATCATCGCTCATCGTCTCTCCACAATCCAAAATGCCGACATTGTTGCTGTCGTGCACGGTGGAGAAGTTACTGAAATTGGTTCACATGACGAACTTCTCCAAAACGATAACAACCTCTACGCCTCCCTCATTCGTCTTCAACAAACCAAGACAGAATCAGAAGAAACCGTTACAACCACTTTCACAAAAGAGAAAACCGCGTCCCCAGTGGTGAACCCTACCAATTTGGTTGAAGATAAAATCAATACTAACAGCTACAATAATGTTAGTATTAGTAACAACGATGTTGCTACTGATAATACAGTGTCGTTTTGGAGATTACTTGCATTGAATGCTCCAGAATGGAAGCAGGCGGTTTTGGGGAGTTTGAATGCAATGGTGTTTGGTGCAATTCAACCTACTTTTGCATTTACCCTAGGATCAATGATATCTGTGTATTTTTATACCGATCATGAGGAGATAAAAAACAAGACTAGGGTTTATTCACTTGTGTTTTTCGGTTTCTCGTTGATAACTTTGGTGGTTACTATTGGACAACACTATAACTTTGCTTACATGGGAGAGTACTTGACTAAACGTGTAAGAGAGAGCATGCTTTCTAAAATACTCACTTTTGAAGTTGGATGGTTTGATCAAGATGAAAATTCTAGTGGTGCTGTTTCTTCTCGACTTGCCAATGATGCTAATGTGGTGAGGTCATTAGTTGGTGATAGAATGTCTTTGTTGGTACAAACTTTCTCAGCAGTAGCAACAGCATACACTATGGGTTTAATCATTTCATGGAGGCTCACACTTGTTACCATTGCTACTCAACCAATTATAATAGCTTGTTATTATACAAAAGGTGTTTTACTCAAAAGCCTTTCAAGCAAGACTATTAAGGCCCAACAACAAAGTAGTAAGTTAGCTTCTGAGGCTGTTTCAAATCTTAGAACCATTACTGCATTTTCATCTCAAGATAGAATACTCAAAATGCTTGAAGAGGCCCAACAAGGCCCAATCAAAGAGAATTTTCGACAAGCATGGTTTGCTGGTCTTGGGCTTGGGTGTTCGCAATTCTTCATGGCTTCTTCTTGGGCCTTAAATTATTGGTACGGCGGGAAGCTTTTGGTTGATGGGATGATAACGAAGAAAGCATTATTTGAGAGTTTTATGGTTGTGTTGACTACGGGGCGGGTTATAATCATGGCTTCTTCTTGGGCCTTAAATTATTGGTACGGCGGGAAGCTTTTGGTTGATGGGATGATAACGAAGAAAGCATTATTTGAGAGTTTTATGGTTGTGTTGACTACGGGGCGGGTTATAGGTGAGGCTGGAAGCATGACTAAAGATATTTCCAAAGGTGCAGATACCGTGAGCTCGATCTTTACCATCCTAGATCGACACACACAAATCGAACCAGACGATCTTGATGGGTTTAAGCCTGTTAATTTAACAGGCCAAATAGAATTTCACGACGTGCATTTTGCATACCCTGCAAGGCCTAATGTGATTATATTTCAAGATTTTTCAATTAAAATTGAAGCGGGAAAATCAACCGCATTAGTAGGTCAAAGCGGTTCAGGAAAGTCGACGATCATAGGATTAATAGAGAGATTCTACGATCCACTAAAAGGAAGTGTAACAATAGATGATATGAACATAAAATCATATAACCTAAAGTCACTTAGAAAACACATAGCACTTGTGAGCCAAGAGCCAACATTGATCAATGGAACCATAAGGGACAACATTGCATATGGAACAACATGTGAGAAAATTGATGAAAATGAGATCATAGAGGCAGCAAGAGTAGCCAATGCTCATGATTTCATAGCTGGTTTAAGAGATGGGTATGAGACATGGTGTGGAGACAAAGGGGTTCAACTTTCAGGGGGACAAAAACAAAGGATAGCAATAGCTAGGGCTATGCTAAAGAATCCAAAAGTTTTGCTACTAGATGAGGCAACAAGTGCACTGGATAACAATTCAGAGAAAGTGGTGCAAGAAGCATTGGATAAGGTGATGGTTGGAAGGACAAGTGTGGTTGTGGCACATAGGTTGAGTACAATACAAAATTGTGATGTCATTGCTGTTTTGGATAATGGGAAAATGGTTGAGATTGGAACTCACAAAACTTTGTTGGCTAATGGACCTTCTGGTGCTTATTACTCTTTAGTAAAGCTTCAAACTAAACATGCAGCCTCAACTGATTAA 3804 0.3877 MNGSIWSIFMHADTQDWFLMILGTIGAIGEGFTAPLVLILNSRMINNYGNSSNIDGNTFIHNINKNAMAWFYLACACFVVCFFEGYCWTRTSGRQAAKMRCRYLKAVLRQDVAYFDLQVTSTSEIITSVSNDTLLIQDILSEKVPNFLMNISWFIASYMMPFIILWRMAIVALPFCIILVIPGFIYGKTLMSLSRNIREEYNQAGTVAEQALSSIRTVYSFVGEQKSMNAFSKALEGTVELGLKQGLTKGLAIGSNGFVFAIWALLCYYGSKMVMDHGAQGGTVFAVGASITVGGLALGASLSNLKYFSEAISAGERIKRVIERVPKIDSNSTKGEILENVSGDVEFDNVEFSYPTRPETIILKKFCLKIPAGKTVALVGESGSGKSTVVSLLQRFYDPTGGEIRLDGVSIHKLNIKWLRSMMGLVSQEPALFATSIKENIMFGKEDATEDEIVEAAQICNAHDFISLLPSGYNTQVGERGVQLSGGQKQRIAIARAIIKKPRILLLDEATSALDTESEQLVQQALDNATTGCTAVIIAHRLSTIQNADIVAVVHGGEVTEIGSHDELLQNDNNLYASLIRLQQTKTESEETVTTTFTKEKTASPVVNPTNLVEDKINTNSYNNVSISNNDVATDNTVSFWRLLALNAPEWKQAVLGSLNAMVFGAIQPTFAFTLGSMISVYFYTDHEEIKNKTRVYSLVFFGFSLITLVVTIGQHYNFAYMGEYLTKRVRESMLSKILTFEVGWFDQDENSSGAVSSRLANDANVVRSLVGDRMSLLVQTFSAVATAYTMGLIISWRLTLVTIATQPIIIACYYTKGVLLKSLSSKTIKAQQQSSKLASEAVSNLRTITAFSSQDRILKMLEEAQQGPIKENFRQAWFAGLGLGCSQFFMASSWALNYWYGGKLLVDGMITKKALFESFMVVLTTGRVIIMASSWALNYWYGGKLLVDGMITKKALFESFMVVLTTGRVIGEAGSMTKDISKGADTVSSIFTILDRHTQIEPDDLDGFKPVNLTGQIEFHDVHFAYPARPNVIIFQDFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGSVTIDDMNIKSYNLKSLRKHIALVSQEPTLINGTIRDNIAYGTTCEKIDENEIIEAARVANAHDFIAGLRDGYETWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNNSEKVVQEALDKVMVGRTSVVVAHRLSTIQNCDVIAVLDNGKMVEIGTHKTLLANGPSGAYYSLVKLQTKHAASTD* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3486 1267 CDD ABC_MTABC3_MDL1_MDL2 345 583 - -
Psa3g3486 1267 SUPERFAMILY ABC transporter transmembrane region 642 1171 IPR036640 GO:0005524|GO:0016021
Psa3g3486 1267 CDD ABC_6TM_Pgp_ABCB1_D1_like 20 318 - -
Psa3g3486 1267 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 934 IPR039421 -
Psa3g3486 1267 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 932 1263 IPR039421 -
Psa3g3486 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1259 IPR027417 -
Psa3g3486 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 661 912 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g3486 1267 ProSitePatterns ABC transporters family signature. 484 498 IPR017871 GO:0005524
Psa3g3486 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 345 581 IPR003439 GO:0005524
Psa3g3486 1267 SMART AAA_5 372 575 IPR003593 -
Psa3g3486 1267 SMART AAA_5 1045 1232 IPR003593 -
Psa3g3486 1267 Pfam ABC transporter transmembrane region 20 292 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g3486 1267 Pfam ABC transporter transmembrane region 661 925 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g3486 1267 CDD ABC_6TM_Pgp_ABCB1_D2_like 644 1001 - -
Psa3g3486 1267 Gene3D - 1008 1266 IPR027417 -
Psa3g3486 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1018 1256 IPR003439 GO:0005524
Psa3g3486 1267 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 934 - -
Psa3g3486 1267 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 932 1263 - -
Psa3g3486 1267 Gene3D - 335 584 IPR027417 -
Psa3g3486 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 583 IPR027417 -
Psa3g3486 1267 Gene3D ABC transporter type 1, transmembrane domain 7 936 IPR036640 GO:0005524|GO:0016021
Psa3g3486 1267 CDD ABC_MTABC3_MDL1_MDL2 1018 1259 - -
Psa3g3486 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 21 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g3486 1267 SUPERFAMILY ABC transporter transmembrane region 15 326 IPR036640 GO:0005524|GO:0016021
Psa3g3486 1267 ProSitePatterns ABC transporters family signature. 1159 1173 IPR017871 GO:0005524
Psa3g3486 1267 Pfam ABC transporter 1037 1187 IPR003439 GO:0005524
Psa3g3486 1267 Pfam ABC transporter 363 512 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3486 Psa-Chr3 294004157 294009352 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3486 4 584 Calmodulin-binding Proteins AT2G36910 35.245 1.83e-101 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3486 K05658 - gmx:100791575 1719.52