Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3484 ATGGGTGATGTGGATCAGAAAAAGGAAAAGGAGAAGAACACGAATGGTTCAATATGGTCCATTTTCATGCATGCTGATACGCAAGATTGGTTCCTTATGATTTTAGGTACCATTGGAGCTATTGGTGAAGGCTTTACTACCCCTTTGGTTTTGCTTATTAGTAGTCGCATGATGAATAATTATGGAACTTCATCTACCACTGATGGAGACATTTTCATCCATAATATCAATAAGAATGCAATGGCTTGGTTCTATTTGGCTTGTGCATCTTTTGTTGTTTGTTTCTTTGAGGGTTATTGTTGGACGAGGACAAGTGGAAGACAAGCTGCAAAAATGAGATGCAGATATTTGAAAGCAGTTCTCAGACAAGATGTTGCTTACTTTGATTTACAAGTCACAAGTACTTCCGAGATTATCACTAGCGTCTCCAATGACACTCTTTTAATTCAAGATGTTCTTAGCGAAAAGGTTCCAAATTTTTTGATGAACATTTCACTGTTCATTGCAAGCTACATAATGCCTTTTATAATGCTATGGAGATTGGCAATAGTAGCATTTCCATTTAGTTTTCTTCTAGTGATCCCTGGATTAATATATGGCAAGACATTGTTGAGTTTATCAAGAAAGATCAGAGAAGAGTATAATCAAGCTGGTACAGTTGCGGAACAAGCATTATCTTCTATCAGAACTGTTTATTCTTTTGTGGGAGAGCATAAATCCATGAATGCTTTCTCTAAAGCTCTAGAAGGTACTGTGGAGTTGGGTTTAAAACAAGGATTAGCGAAAGGTTTCGCCATTGGAAGCAATGGTTTTGTGTTTGCTATTTGGGCTTTCTTGTGCTATTATGGTAGCAAAATGGTTATGTATCATGGTGCTCAAGGAGGGACAGTTTTTGCAGTTGGAGCAAGCATAACGGTCGGTGGATTAGCATTAGGAGCTAGTTTATCCAACATGAAGTATTTCTCTGAAGCAATGACGGCCGGTGAAAGAATCAAAGGAGTGATAGAAAGAGTTCCGAAGATAGATTCTAACAGCACAAAAGGAGAAATATTAGAAAGCGTTTCCGGGGAAGTGGAATTTGACAATGTAGAATTTTCATACCCAACAAGACTAGAAACAATTATCCTTAAAAAATTCTGTCTCAAGATTCCAGCAGGAAAAACGGTTGCATTGGTTGGTGAAAGTGGCTCGGGAAAATCAACAGTTGTATCATTGTTGCAGAGATTTTATGATCCAACTGGTGGAGAGATACGTCTCGATGGAGTGGTTATTAATAAGTTAAAGATTAAATGGCTTAGATCGATGATGGGTTTGGTTAGTCAAGAACCTGCTTTGTTTGCGACAAGCATTAAAGAGAATATAATGTTTGGTAAAGAAGATGCTACTGAGGATGAGATTGTTGAAGCTGCTAAAATTTGTAATGCTCATGATTTCATTTCTTTGCTTCCTTCTGGTTACAATACTCAGGTAGGAGAAAGAGGGGTTCAACTATCAGGTGGTCAAAAACAAAGGATAGCAATTGCAAGAGCAATAATTAAAAAACCACGAATCCTTCTTTTAGACGAAGCAACCAGTGCATTAGATACCGAGTCCGAACGACTTGTTCAACAAGCACTCGACAATGCAACCACAGGTTGCACCGCCGTCATCATTGCTCATCGTCTCTCCACAATCCGAAATGCCGACATTGTTGCTGTCGTGCACGGTGGAGAAGTTACTGAAATTGGTTCACATGACGAACTTCTCCAAAACGATAACAACCTCTACGCCTCCCTCGTCCGTCTTCAACAAACCATGACAGAATCAGAAGAAACCGTTACAACTACTTTCACAAAAGAGAAAACCGCGTCCCCGGTGGTGAATCCTACAAATTTGGTTGAAGATAAAATCAATACTAACAGCTACAATAATGTTAGTCTTAGTAACAACGATGTTGCTACTGATAATACAGTGTCGTTTTGGAGATTACTTGCATTCAATGCTCCAGAATGGAAGCAAGCAGTTTTGGGGAGTTTGAATGCGATGGTGTTTGGTGCAGTTCAACCTACTTTTGCATTTACCCTAGGATCAATGATATCTGTGTATTTTTATACAGATCATGAGGAGATAAAAAACAAGACTAGGGTTTATTCACTTGTGTTTTTCGGTTTTTCGTTGATAACTTTGGTGGTCAATATTGGACAACACTATAACTTTGCTTACATGGGAGAGTACTTGACTAAACGTGTAAGAGAGAGCATGCTTTCTAAAATACTCACTTTTGAAGTTGGATGGTTTGATCAAGATGAAAATTCTAGTGGTGCTGTTTCTTCTCGACTTGCCAATGATGTTAATGTGGTGAGGTCATTAGTTGGTGATAGAATGTCTTTGTTGGTACAAACTTTTTCAGCAGTTGCAATAGCATACACTATGGGTTTAATCATTTCATGGAGGCTCACACTTGTTACCATTGCTACTCAACCAGTCGTAATAGCTTGTTTTTACACAAAAGGTGTTTTACTCAAAAGCCTTTCAAGCAAGTCTATTAAGGCCCAACAACAAAGTAGTAAGTTAGCTTCTGAGGCTGTTTCAAATCTTAGAACCATTACTGCATTTTCATCTCAAGATAGAATACTCCAAATGCTTGAAGAGGCTCAACAAGGCCCAATTCAAGAAAATTTTCGACAAGCGTGGTTTGCTGGTCTTGGGCTTGGGTTTTCACAATTCCTCATGTCTTGTTCTTGGGTGTTAAATTATTGGTATGGCGGGAAGCTTTTGGCGGATGGGAAGATAACGAAGAAAGCATTGTTTGAGAGTTTTATGGTTGTGCTTTTGGCGGATGGGAAGATAACGAAGAAAGCATTGTTTGAGAGTTTTATGGTTGTGGTGAGTACGGGGCGGGTTATAGGTGAAGCCGGAAGCATGACTAAAGATATTGTCAAAGGTGCAGATACCGTGAGCTCGATCTTTGCCATTCTAGATCGGCGCACAAAAATCGAACCAGACAATCCGGATAGGTTTAAGCCCGTTACTTTAACCGGCCAAATAGAGTTTAACGACGTGCATTTCGCATACCCTGCTAGGCCTAATGTGATTATATTTCAAGGTTTTTCAATTAAAATTGAAGCGGGAAAATCGACAGCATTAGTAGGTCAAAGTGGTTCAGGAAAGTCGACGATCGTAGGATTAATAGAGAGATTCTATGATCCACTAAAAGGAAGTGTGACAATAGATGATATGAACATAAAATCATATAACCTAAAGTCACTAAGAAAACACATAGCACTTGTGAGTCAAGAGCCAACATTGATCAATGGAACCATAAGGGACAACATTGCATATGGAACAACATGTGAGAAAATTGATGAAGTTGAGATCATAGAGGCAGCAAGAGTAGCCAATGCTCATGATTTCATAGCTAGTTTGCAAGATGGGTATGAGACATGGTGTGGAGACAAAGGGGTCCAACTTTCAGGGGGACAAAAACAAAGGATAGCAATAGCTAGGGCTATGTTAAAGAATCCAAAAGTTTTGCTACTAGATGAGGCAACAAGTGCACTGGATAACAATTCAGAGAAAGTGGTGCAAGAAGCATTGGATAAGTTGGATAACAATTCAGAGAAAGTGGTGCAAGAAGCATTGGATAAGGTGATGGTTGGAAGGACAAGTGTGGTTGTGGCACATAGGTTGAGTACAATACAAAATTGTGATGTCATTGCTGTTTTGGATAAAGGGAAAATGGTTGAGATTGGAACTCACAAAACTTTGTTGGCTAATGGACCTTCCGGTGCTTATTACTCTTTGGTAAAGCTTCAAACTAAACATGCAGCCTCAACTGATTGA 3822 0.3922 MGDVDQKKEKEKNTNGSIWSIFMHADTQDWFLMILGTIGAIGEGFTTPLVLLISSRMMNNYGTSSTTDGDIFIHNINKNAMAWFYLACASFVVCFFEGYCWTRTSGRQAAKMRCRYLKAVLRQDVAYFDLQVTSTSEIITSVSNDTLLIQDVLSEKVPNFLMNISLFIASYIMPFIMLWRLAIVAFPFSFLLVIPGLIYGKTLLSLSRKIREEYNQAGTVAEQALSSIRTVYSFVGEHKSMNAFSKALEGTVELGLKQGLAKGFAIGSNGFVFAIWAFLCYYGSKMVMYHGAQGGTVFAVGASITVGGLALGASLSNMKYFSEAMTAGERIKGVIERVPKIDSNSTKGEILESVSGEVEFDNVEFSYPTRLETIILKKFCLKIPAGKTVALVGESGSGKSTVVSLLQRFYDPTGGEIRLDGVVINKLKIKWLRSMMGLVSQEPALFATSIKENIMFGKEDATEDEIVEAAKICNAHDFISLLPSGYNTQVGERGVQLSGGQKQRIAIARAIIKKPRILLLDEATSALDTESERLVQQALDNATTGCTAVIIAHRLSTIRNADIVAVVHGGEVTEIGSHDELLQNDNNLYASLVRLQQTMTESEETVTTTFTKEKTASPVVNPTNLVEDKINTNSYNNVSLSNNDVATDNTVSFWRLLAFNAPEWKQAVLGSLNAMVFGAVQPTFAFTLGSMISVYFYTDHEEIKNKTRVYSLVFFGFSLITLVVNIGQHYNFAYMGEYLTKRVRESMLSKILTFEVGWFDQDENSSGAVSSRLANDVNVVRSLVGDRMSLLVQTFSAVAIAYTMGLIISWRLTLVTIATQPVVIACFYTKGVLLKSLSSKSIKAQQQSSKLASEAVSNLRTITAFSSQDRILQMLEEAQQGPIQENFRQAWFAGLGLGFSQFLMSCSWVLNYWYGGKLLADGKITKKALFESFMVVLLADGKITKKALFESFMVVVSTGRVIGEAGSMTKDIVKGADTVSSIFAILDRRTKIEPDNPDRFKPVTLTGQIEFNDVHFAYPARPNVIIFQGFSIKIEAGKSTALVGQSGSGKSTIVGLIERFYDPLKGSVTIDDMNIKSYNLKSLRKHIALVSQEPTLINGTIRDNIAYGTTCEKIDEVEIIEAARVANAHDFIASLQDGYETWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNNSEKVVQEALDKLDNNSEKVVQEALDKVMVGRTSVVVAHRLSTIQNCDVIAVLDKGKMVEIGTHKTLLANGPSGAYYSLVKLQTKHAASTD* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3484 1273 SMART AAA_5 1036 1238 IPR003593 -
Psa3g3484 1273 SMART AAA_5 385 571 IPR003593 -
Psa3g3484 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1190 1265 IPR027417 -
Psa3g3484 1273 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 937 1195 IPR039421 -
Psa3g3484 1273 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1190 1269 IPR039421 -
Psa3g3484 1273 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 20 937 IPR039421 -
Psa3g3484 1273 CDD ABC_MTABC3_MDL1_MDL2 1009 1265 - -
Psa3g3484 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1262 IPR003439 GO:0005524
Psa3g3484 1273 Gene3D ABC transporter type 1, transmembrane domain 20 938 IPR036640 GO:0005524|GO:0016021
Psa3g3484 1273 Gene3D ABC transporter type 1, transmembrane domain 939 998 IPR036640 GO:0005524|GO:0016021
Psa3g3484 1273 Pfam ABC transporter transmembrane region 674 937 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g3484 1273 Pfam ABC transporter transmembrane region 33 305 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g3484 1273 Pfam ABC transporter 376 525 IPR003439 GO:0005524
Psa3g3484 1273 Pfam ABC transporter 1028 1178 IPR003439 GO:0005524
Psa3g3484 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 323 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g3484 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 596 IPR027417 -
Psa3g3484 1273 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Psa3g3484 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 331 - -
Psa3g3484 1273 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524
Psa3g3484 1273 Gene3D - 999 1196 IPR027417 -
Psa3g3484 1273 Gene3D - 1197 1266 IPR027417 -
Psa3g3484 1273 Gene3D - 348 597 IPR027417 -
Psa3g3484 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1195 IPR027417 -
Psa3g3484 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 674 925 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g3484 1273 SUPERFAMILY ABC transporter transmembrane region 26 339 IPR036640 GO:0005524|GO:0016021
Psa3g3484 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 657 992 - -
Psa3g3484 1273 SUPERFAMILY ABC transporter transmembrane region 655 993 IPR036640 GO:0005524|GO:0016021
Psa3g3484 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Psa3g3484 1273 ProSitePatterns ABC transporters family signature. 1150 1164 IPR017871 GO:0005524
Psa3g3484 1273 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 20 937 - -
Psa3g3484 1273 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 937 1195 - -
Psa3g3484 1273 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 1190 1269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3484 Psa-Chr3 293926438 293930894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3484 21 1265 Calmodulin-binding Proteins AT2G36910 43.868 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3484 K05658 - gmx:100791575 1724.52