Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3445 ATGGCAAAACCAGGGGTGTTAGATTCTGATCCAGAGATTATGGTGAAGAAAGTTCTAGAGATGAAGAAGGAGTTAAAGAAGCTTGTGAGGTCCATTGTTGAGGATGAAGATACAAGCATTGAAGCTCTTGATAAAGCTAAAGAAACTCTTTGTGTTCTTAAGGATTTGAAGCTTAGAAAGAAATCTCACTCTTCAATGTCTTTTAAGATAAACAAAAATGTTACTTTCCCAGATGAATTCAAATGTCCACTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTTGCTTCTGGTCAGACATATGATAGACCATTCATTCAAAAATGGTTGAAGGCTGGAAATAGGACATGCCCTCAAACTCATCAAGTTCTCTCACACACTCTCCTTACTCCAAATCATCTTATAAGAGAAATGATAGAAAAATGGTCTAAAAATCAAGGGATTGAATTGTGCAATGTTATTAATTATATCAATGGTGAAGGTGCTAAAGAAGCTGATCAGAATCACTTTTTATGTTTGCTTGAGAAAATGTCATCAACACTTTGTGATCAGAAAGAAGCTGCAAAACAACTTAGGTTGTTGACAAAGAAGCATCCTTGTTTTAGAGTACTTTTTTGCGATTTTGAAAATGCAATTCCTCAATTGCTTAAGCCTATTTGCGACGGAAGTAGTATTAACCATGATCTTCAAGAAGACGTGATCACGACACTTCTCAATATCTCGATTCATGACAACAATAAGAAACAAGTAGCTGAAACTCCAATGGTGATTCATCTCCTTATGAAGTCATTGAGATGTGGAACAATCGAGACACGAGCCAATGCTGCAGCGACCCTTTTCACGTTATCAGCACTAGACTCGAACAAAGAACTTATAGGAAAATCAAACGCCTTGAAACCGCTTATCGACCTATTGGAAGAAGGGAATCCCTTTACTATGAAAGATGTTGCTTCAGCAATATTCACATTATGTATGATGCACGACAACAAGGCAAGAGCGGTGAAAGACGGTGCGGTTAGAGTGATTATGACGAAGATGAAAAACCGGCTTCACGTCGACGAATTACTAGCTATCCTCGCGTTACTTTCGACTCATCAGAAAGCTGTTCTTGAAATGGCAGAGCTTGGAGCTGTTCCTTGTTTGCTAAGCATCATGCGAGAGAGCTCGTGCGAACGCAATAAGGAGAACTGCGTAGCGATTCTTCAAACTATATGTTTATATGATAGATCCAAGTTGAGGGAAATAAAGGAAGAAGAAAATAGTTATAGAACAATATCTGAACTTGCAAAGAATGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGGTTGCATAGGGTTGTTAATATCACACACACTGCATAA 1374 0.3836 MAKPGVLDSDPEIMVKKVLEMKKELKKLVRSIVEDEDTSIEALDKAKETLCVLKDLKLRKKSHSSMSFKINKNVTFPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLKAGNRTCPQTHQVLSHTLLTPNHLIREMIEKWSKNQGIELCNVINYINGEGAKEADQNHFLCLLEKMSSTLCDQKEAAKQLRLLTKKHPCFRVLFCDFENAIPQLLKPICDGSSINHDLQEDVITTLLNISIHDNNKKQVAETPMVIHLLMKSLRCGTIETRANAAATLFTLSALDSNKELIGKSNALKPLIDLLEEGNPFTMKDVASAIFTLCMMHDNKARAVKDGAVRVIMTKMKNRLHVDELLAILALLSTHQKAVLEMAELGAVPCLLSIMRESSCERNKENCVAILQTICLYDRSKLREIKEEENSYRTISELAKNGTSRAKRKASGILERLHRVVNITHTA* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3445 457 SUPERFAMILY ARM repeat 182 447 IPR016024 -
Psa3g3445 457 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
Psa3g3445 457 SUPERFAMILY RING/U-box 75 153 - -
Psa3g3445 457 Gene3D - 150 452 IPR011989 -
Psa3g3445 457 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Psa3g3445 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 149 IPR013083 -
Psa3g3445 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 455 - -
Psa3g3445 457 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Psa3g3445 457 CDD RING-Ubox_PUB 80 122 IPR045210 -
Psa3g3445 457 PANTHER U BOX DOMAIN-CONTAINING 5 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3445 Psa-Chr3 291313878 291316593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3445 138 457 U-box Gene Family AT3G07360 59.692 9.03e-125 364