Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3441 ATGAGATCTCACACTTTGGTTGCTGCAAACTCTTACATTAATAGCAATAACAATACTTCATGTTACAACACCCCTTTGAATTCTCCTCCTAAATTGAGCATTCAAAACATGAGTTTGAATTCAACCGTTGCGCAATTCTCAACCGATCTTGGTTTTGCTGAAAGAGCTGCAAAATTCTCTTGCTTTGGAAGTAAGAGTTTTAATGGAAGAACAACAACACAATTGAGTCAAAGTCAAAGATCTACTCCATTGATGGAAAATGGAAAACTCTCTAGGGTTTCAAGTAGTCCATCATTGAAAGAACTTGGATCTCAATCTCAAGAGAACATTCATGATCTAATTAAAGTTAACTATTCTCAAGAAGAATCAACAATCTCTGAGAATGGTAACAAAACATCTCCTTATGTGAATTCGAGGAAAAGAAAAGCATCTTCCAAAGGAAAAACCAAAGAAAATTCAACTTCTAGTAACCTTTTAATGGCATGTGAAGTTGGTGAAGATTCAAATTCAAAGCGCATGAAAACAAGTGAAGGTGAAAAAGTTGAAAATGGTAAAGTAAAAGCAGATGAAGAGTCAAAAGGAGGTACAGATAGTAATAATGGAGGTGATGAAAAGCAGAATAAGAGTAACTCAAAACCACCTGAGGCTCCAAAGGATTACATTCATGTCATAGCAAGAAGATGTCAAGCTACTGACAACCATAGTCTTGCAGAAAGAATTAGAAGGGAGAAAATAAGTGAAAGAATGAAGTTTCTAGAAGATCTCGTACCCGGTTGCAATAAGGTTACTGGAAAAGCACTTATGATTGATGAAATTATAAACTATGTTCAATCATTGCAGCGTCAAGTTGAGATTCCTCAGCACCATCCTTTTATGGGCAAACACCAGCAAAATCCAGCAATCCAGCATAACATTTCTAATGGAACTATGCCACACAACTCATTCGACCCATTAGAAAATGCTTTATGCCAAAACCTTGGCATGCACTTATCTTCACTTAATGGATTCCATGAAGCTGCCTCTTAG 1026 0.3645 MRSHTLVAANSYINSNNNTSCYNTPLNSPPKLSIQNMSLNSTVAQFSTDLGFAERAAKFSCFGSKSFNGRTTTQLSQSQRSTPLMENGKLSRVSSSPSLKELGSQSQENIHDLIKVNYSQEESTISENGNKTSPYVNSRKRKASSKGKTKENSTSSNLLMACEVGEDSNSKRMKTSEGEKVENGKVKADEESKGGTDSNNGGDEKQNKSNSKPPEAPKDYIHVIARRCQATDNHSLAERIRREKISERMKFLEDLVPGCNKVTGKALMIDEIINYVQSLQRQVEIPQHHPFMGKHQQNPAIQHNISNGTMPHNSFDPLENALCQNLGMHLSSLNGFHEAAS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3441 341 MobiDBLite consensus disorder prediction 149 163 - -
Psa3g3441 341 MobiDBLite consensus disorder prediction 72 105 - -
Psa3g3441 341 Gene3D - 229 289 IPR036638 GO:0046983
Psa3g3441 341 MobiDBLite consensus disorder prediction 120 216 - -
Psa3g3441 341 SMART finulus 235 285 IPR011598 GO:0046983
Psa3g3441 341 Pfam Helix-loop-helix DNA-binding domain 233 280 IPR011598 GO:0046983
Psa3g3441 341 MobiDBLite consensus disorder prediction 120 140 - -
Psa3g3441 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 291 IPR036638 GO:0046983
Psa3g3441 341 PANTHER BHLH TRANSCRIPTION FACTOR 290 340 - -
Psa3g3441 341 PANTHER BHLH TRANSCRIPTION FACTOR 3 284 - -
Psa3g3441 341 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 284 IPR024097 GO:0006355
Psa3g3441 341 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 290 340 IPR024097 GO:0006355
Psa3g3441 341 MobiDBLite consensus disorder prediction 167 198 - -
Psa3g3441 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3441 Psa-Chr3 290744685 290746763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3441 37 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 50.973 2.35e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g3441 HLH 0.00016 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3441 - - mtr:MTR_7g053410 511.916