Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3440 ATGGAAAATCAATTTTTTTCAAACACTAATCTTCATTTTGAACAATCACATCCTACATGGAAATCACTCTCACTTTCATCAGAACAACAACATAATCAAGAATGCTTCTACACACCATCAGATCAATGTGTTCATCAATTTGACTCAGCACTTAGTTCAATGGTATCTTCACCAGCAGCTTCCAATTCCAACATGTCAAATGAGAACTTTGTCATCAGAGAATTGATTGGAAAATTGGGAAACATTGGTAATTGTTCTGATGAGATCTCACACACTCTGATCGTTGCAAACTCTTACATCAATAGCAATAACAATACTTCATGCTACAACACCCCTTTGAATTCTCCTCCTAAATTGAGCATTCAAAACATGAGTTTGAATTCAACTGTTGCGCAATTCTCAACTGATCCTGGTTTTGCTGAAAGAGCTGCAAAATTCTCTTGCTTTGGAAGTAAGAGTTTTAATGGAAGAACAACAACACAATTGAGTCAAAGTCAAAGATCTACTCCATTGATAGAAAATGGAAAACTATCTAGAGTTTCAAGTAGTCCATCATTGAAAGAATTTGGATCTCAATCTCAAGAGAACATTCATGATCCAATTGAAGTTAACAATTCTCAAGAAGAATCAACAATCTCTGAAAATGGTAACAAACCATCTCCTTATGTGAATTCAAGGAAAAGAAAAGCATCTTCCAAAGGAAAAACTAAAGAAAATTCAACTTCTAGTAACCCTCTAATGGCTTGTGAAGTTGGTGAAGATTCAAATTCAAAGCGCATGAAAACAAGTGAAGGTGAAAAAGTTGAAAATGGTAAAGTAAAAGCAGAGGAAGAGTCAAAAGGAGGTACAAATAGTAATAATGAAGGTGATGAAAAACAGAATAAGAGTAACTCAAAACCACCTGAGGCTCAAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGTCATAGTCTTGCAGAAAGAGTTAGAAGGGAGAAAATAAGTGAAAGAATGAAGCTTCTACAAGATCTTGTACCGGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTTCAATCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAACTGGCTTCTGTCAACACAAGGGTGGATTTTAGTATTGAAAGGCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCTCTCAAGATTCCTCAGCACCATCCTTTTATGGGCAACAACACCAGCAAAATTCAGCAATCCACAATAACATTTCTAATGGAACTATGCCCCACAACTCATTGGACCCATTAGAAAATGCTTTATGCCAAAACCTAGGCATGCACTTATCTTCACTTAATGGATTCCATGAAGCTGTTTCTCAGTATCCATTAACATTCTCTGAAGATGACCTCCACACAATTGTTCAAATGGGATTTGGACAAACCGACAATAGAAAAACACCAATACAGTTTCAGAGTTTAAACGGCACAAATGAACTACCCCTATGA 1533 0.3588 MENQFFSNTNLHFEQSHPTWKSLSLSSEQQHNQECFYTPSDQCVHQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGNCSDEISHTLIVANSYINSNNNTSCYNTPLNSPPKLSIQNMSLNSTVAQFSTDPGFAERAAKFSCFGSKSFNGRTTTQLSQSQRSTPLIENGKLSRVSSSPSLKEFGSQSQENIHDPIEVNNSQEESTISENGNKPSPYVNSRKRKASSKGKTKENSTSSNPLMACEVGEDSNSKRMKTSEGEKVENGKVKAEEESKGGTNSNNEGDEKQNKSNSKPPEAQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRVDFSIERLISKDIFQSNNSLAHPIFSQDSSAPSFYGQQHQQNSAIHNNISNGTMPHNSLDPLENALCQNLGMHLSSLNGFHEAVSQYPLTFSEDDLHTIVQMGFGQTDNRKTPIQFQSLNGTNELPL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3440 510 PANTHER BHLH TRANSCRIPTION FACTOR 19 506 - -
Psa3g3440 510 Coils Coil 363 383 - -
Psa3g3440 510 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 366 IPR011598 GO:0046983
Psa3g3440 510 MobiDBLite consensus disorder prediction 254 285 - -
Psa3g3440 510 Pfam Helix-loop-helix DNA-binding domain 320 367 IPR011598 GO:0046983
Psa3g3440 510 SMART finulus 322 372 IPR011598 GO:0046983
Psa3g3440 510 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 385 IPR036638 GO:0046983
Psa3g3440 510 Gene3D - 313 387 IPR036638 GO:0046983
Psa3g3440 510 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 19 506 IPR024097 GO:0006355
Psa3g3440 510 MobiDBLite consensus disorder prediction 157 303 - -
Psa3g3440 510 MobiDBLite consensus disorder prediction 236 250 - -
Psa3g3440 510 MobiDBLite consensus disorder prediction 157 227 - -
Psa3g3440 510 CDD bHLH_AtBPE_like 306 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3440 Psa-Chr3 290737843 290741918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3440 1 469 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 45.010 9.70e-111 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g3440 HLH 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3440 - - mtr:MTR_7g053410 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3440 3 290737843 290741918 Psa4g4723 4 416861269 416864492 PCT