Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3422 ATGGCAACATCAGAGCAGCTAGCTCCAACCAAAACTCCGGCACCTGATGTTGTTGGTCATGCCTTTGTTGATCAGTACTATCATATGTTGCATGAAAGCCCTCAGCTGGTGCATAGGTTTTACCAAGAAGTCAGTAAGCTTGGTCGTCCTGAACCAAATGGGATAATGAGCATCACTACCACTATGACTGAAATTGACAAGAAGATACTATCATTGGGTTATAGTGAGCTGAATGCAGAGATTATATCTGTGGATGCACAAGAGTCCTATGGTGGGGGAGTGATTGTCTTGGTGACGGGGTTTATGACGGGAAAGGATGATATTAAACAGAAATTTACTCAAAGTTTCTTCCTTGCTCCTCAAGAGAAAGGCTACTTTGTTTTGAATGATGTTTTCAGATATGTTGATGAAAATGGAATAGAAGAGTCTGATCATGTAATTGTATCACCTACTTCTACTGACAATGTGTCAGAACCACCTGTGCTAGAGGCGCAAGTTCCAGAGCAAATATCTGTGACTGTTGAGGATGGTGTTGGGGAAGAAGTCTACAATCCTGAAAATGAGCAAGTGTCTGTTGAAGAAGAGGAAGTTCCTGTTGCTGAAGTTCTTGATGAAATTCCTGATGATTCACAGATGATATCTGGATTGGCATCCCAAATTGAAGAAGTACCAAAGAAGTCATATGCCTCTATTGTTAAGGTAATGAAAGAGGGTGGAGTACCATCCTCCATAGTGACAGCTGTTTCTGTGAAATCTGTCCGTAAGATTCAAGAACAGCAGAGCACCACTGCACCTCCACCATTCAGTGGGCCAGAAACAAATGGATCTAGTATAAACACCAACGAAGGTGGAAACAATCAAGAAACTGAAGTTGAGGGCTATTCAATTTATGTGAAAGGGCTGCCTGGAAATGCTACGCCTGCACTTCTCGAGAATGAGTTCAAGAAGTTTGGCCCTATTAAAAGTGGTGGTATCCAAGTTAGGACGCAAAAGGGTTTTTCCTTTGGCTTTGTGGAGTTTGAAGTGGAAAGTGCTGTGCACAAGGCAGTCGAGGTTTCACCAGTTCAGATCAGTGGCCGTTACGTTATTGTTGAGGAAAAGAGATCAACTAATCGAGGTTATAGAGGGCGATTCTCGACTGGAAGGACACCTGGATTCAGGGGTGAGGGAGCAAGAGGACGAGGAAACTATGGAAATAGCCGAAGTTTTGGACGTGGAGACTTCAACGGTCGCGGAGACATTAACGGCCACGGAGACTACAACGGTCGTGGAGACTTCAACGGTCGTGGAGACTTCAATGGACGTGGAGACTTTAACGGAAGAGGGGAATATGGATATAGGAATGGTAACCGGGGAGGATTTTCAAGCCGTGGAGGTGATGTGTATCAGAGAAACGACCATATGGGAACCAATGGTGGCCGCATGAATCGTGCTGGTGGTTCTTCTGTTAACTCGGCACCCAAACCTACTGGTGCTCAACGTGTTCCTGCCTCTGCTTGA 1500 0.4487 MATSEQLAPTKTPAPDVVGHAFVDQYYHMLHESPQLVHRFYQEVSKLGRPEPNGIMSITTTMTEIDKKILSLGYSELNAEIISVDAQESYGGGVIVLVTGFMTGKDDIKQKFTQSFFLAPQEKGYFVLNDVFRYVDENGIEESDHVIVSPTSTDNVSEPPVLEAQVPEQISVTVEDGVGEEVYNPENEQVSVEEEEVPVAEVLDEIPDDSQMISGLASQIEEVPKKSYASIVKVMKEGGVPSSIVTAVSVKSVRKIQEQQSTTAPPPFSGPETNGSSINTNEGGNNQETEVEGYSIYVKGLPGNATPALLENEFKKFGPIKSGGIQVRTQKGFSFGFVEFEVESAVHKAVEVSPVQISGRYVIVEEKRSTNRGYRGRFSTGRTPGFRGEGARGRGNYGNSRSFGRGDFNGRGDINGHGDYNGRGDFNGRGDFNGRGDFNGRGEYGYRNGNRGGFSSRGGDVYQRNDHMGTNGGRMNRAGGSSVNSAPKPTGAQRVPASA* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3422 499 Pfam Nuclear transport factor 2 (NTF2) domain 18 134 IPR002075 -
Psa3g3422 499 Gene3D - 8 138 - -
Psa3g3422 499 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 405 IPR039539 -
Psa3g3422 499 MobiDBLite consensus disorder prediction 256 286 - -
Psa3g3422 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 351 IPR000504 GO:0003723
Psa3g3422 499 ProSiteProfiles Nuclear transport factor 2 domain profile. 18 134 IPR018222 -
Psa3g3422 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 369 IPR000504 GO:0003723
Psa3g3422 499 SMART rrm1_1 295 365 IPR000504 GO:0003723
Psa3g3422 499 MobiDBLite consensus disorder prediction 465 499 - -
Psa3g3422 499 CDD RRM_SF 296 365 - -
Psa3g3422 499 SUPERFAMILY RNA-binding domain, RBD 287 397 IPR035979 GO:0003676
Psa3g3422 499 PANTHER NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN-RELATED 9 405 - -
Psa3g3422 499 CDD NTF2 15 136 IPR018222 -
Psa3g3422 499 Gene3D - 247 386 IPR012677 -
Psa3g3422 499 SUPERFAMILY NTF2-like 15 135 IPR032710 -
Psa3g3422 499 MobiDBLite consensus disorder prediction 475 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3422 Psa-Chr3 289373921 289379036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3422 295 351 Eukaryotic Initiation Factors Gene Family AT2G36660 41.379 3.49e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3422 K24983 - gmx:100800392 676.781