Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3420 ATGGCCTCAAACAGCATAACTTCAACATCAAGATCTAAAGGACAGAAACAACATGGAGAGGCAGCTATTGACGATCATCAAATTTTGAAGAACAAAATACATTCGTTAAAAGAAAAGATCCAAGACGAGCGATTTAAATCTATTAAAGATAAACTTTGGATAAATAGGGAGAATCTTCGGTGTCAACTTTCTGAGGTCATGGCAGCGGTGTCAAGAAATACCTCATTACAGACCGAGGAAGCTAACGCTAAAATGCTTTCTTCAAGAATTGGCAATCCTATCAGTAAGTTTAGTGGTTTCCGTCAAGGTTTAGGAAGGAGAGAACAAATACAAAATCAAGATGTATCCTTTGAGAAAAGTTTCAAGTTACCATACACTGAAAAGATACCTACATATACATTTTGGTTAAATTTGGCCAGGAATGAGAGAATGACCAAAGATCAATCATTTGCGGCAAGAAGAAACATATACTATGATCAACATTGTGGTGAAACAAGGATATGTAGTGACACCGAAGAAGAGTGCAAAGAGAATAGAGAAGCTAAACATGATTTTTCTCAGGGTGAAGACCAAATTCTATGGATGGCATTTGAGGAACACGATTTTACTGAGGAAGCATTGAGTGTTGTTCAAAGATGTATTGGGGGCACCTGCTCAGAGATTCAGGAGAGGTACAAATATCTCAAGGAAAAGGACCTGCATGCTAAAAATTCTCGAGAAAGTGAATCTATTACGGGAATATGTTTGGACAAAAGTTTGAATGCCAGTTTAAGTACTTTTGATCACCTTTTCTGTCGTCGTTGCATGATCTATGATTGTCCTTTACATGGATGTTCGCAACCCTTAATATATCCTAGTGAAAAGCAATCAGTTTGGAATGAACCAAAAGGTCAGAGTAAACCCTGCAGTGATAATTGTTACCTTAAGATAAAGGATGTGAATACTTCATCAAAAAAACCAACGGTGGAGTCTTCTCCGGATAAAGAAATTGAAAAAACAGAAAATGTTGAAATGGATTATCATTTAGATCTCAATTCAGATGTTAAGGTCTCAGATCTGCCTGACTTATCATTATGTGAATCTCAAAATTCTCATAAAAAGCTGAAGGGAATCCTAGAGAACAAAGAAACCGCAAATGGAGATCATAACAAAGAACGTGCAGAAATCACAGATAAAATAGAATTGTTGCGATTATCCAACCCAGTGGAATGGCAAGTTGATGAGATGCATGGTATATCAGATTGGAAACCTTTAGAGAAAGATTTATATTTGAAGGGAATTGAAATGTTTGGGAGAAACAGTTGTCTTATATTTCGAAACTTACTTTCTGGATTCAAGACTTGCATTGAAATAGCCAGCTACATGCGTGTCGAAGAGTTGGCCCGCAGATCCGTGGATGAAAATGGAAAATTTGCTGCAAAGTGCACTGACCATAAGACGCGATCAAGTTTAAGGTCATCTAGAAAAAAAGGAAAGAGCAAGCAATTCAAATATTTACGAAAGTCTCAACCCCGCCCATATAATCCGGAAAGAATGAATGCTGGAGAAAACATACTCCTTACGCATTATACACCTTGTGAGTGTCAAGGAAAGTGTGGAAAACAATGTCCTTGTCGTCTTAATGAATATTGCTGTGAAAAGTATTGCGGGTGTGCAAAACAATGTGGAAATCTGTTCAGAGGATGCCATTGTGCTATAGGCCAATGCAGAAATGGACACTGTCCATGCTTTGCAGCAAACCGGGAATGTGACCCAGATGTCTGCAGAAGTTGCTGGGCTAGTTGTGGCGATGGTTCATTAGGAGAGCCACCTCGACATGGAAAAAATGAATGTGAAAATATGAATCTTCTTCTAGGGAAAAAGCGAAGGATTCTTTTAGGCAGGTCTGATGTTGCTGGATGGGGAGTCTTCTTAAAGAATCCTGCCAACAAAGATGATTTTTTAGGAGAGTATACAGGGGAGTTAATATCTCATACAGAAGCAGAGAAGCGCGGTAAATTGTATGAACGTGCAGACTTTTCTTTTCTTTTTGACTTGGATGATGAGTATGTTATTGATGCATATCGCAAAGGAGACAAATTGAAATTTGCAAACCACTCCTCAAAACCCAACTGTTATGCAAGGGGTATGTTTGTTCGTGGAGACCATCGAGTAGCCATATTTGCTTTGGAACGCATTGAAGCTGGTGAGGAACTTTTCTATGATTACAAGTATGCTGCAAATCACAGAGCACCTGCATGGTTTGTTAAAGCCAATAATGCTGCCAAGAAAAAAGAACTTGCGAATTCTCATGCCAAAGCTAAGAAACGCTAG 2313 0.3861 MASNSITSTSRSKGQKQHGEAAIDDHQILKNKIHSLKEKIQDERFKSIKDKLWINRENLRCQLSEVMAAVSRNTSLQTEEANAKMLSSRIGNPISKFSGFRQGLGRREQIQNQDVSFEKSFKLPYTEKIPTYTFWLNLARNERMTKDQSFAARRNIYYDQHCGETRICSDTEEECKENREAKHDFSQGEDQILWMAFEEHDFTEEALSVVQRCIGGTCSEIQERYKYLKEKDLHAKNSRESESITGICLDKSLNASLSTFDHLFCRRCMIYDCPLHGCSQPLIYPSEKQSVWNEPKGQSKPCSDNCYLKIKDVNTSSKKPTVESSPDKEIEKTENVEMDYHLDLNSDVKVSDLPDLSLCESQNSHKKLKGILENKETANGDHNKERAEITDKIELLRLSNPVEWQVDEMHGISDWKPLEKDLYLKGIEMFGRNSCLIFRNLLSGFKTCIEIASYMRVEELARRSVDENGKFAAKCTDHKTRSSLRSSRKKGKSKQFKYLRKSQPRPYNPERMNAGENILLTHYTPCECQGKCGKQCPCRLNEYCCEKYCGCAKQCGNLFRGCHCAIGQCRNGHCPCFAANRECDPDVCRSCWASCGDGSLGEPPRHGKNECENMNLLLGKKRRILLGRSDVAGWGVFLKNPANKDDFLGEYTGELISHTEAEKRGKLYERADFSFLFDLDDEYVIDAYRKGDKLKFANHSSKPNCYARGMFVRGDHRVAIFALERIEAGEELFYDYKYAANHRAPAWFVKANNAAKKKELANSHAKAKKR* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3420 770 SMART CXC_2 557 594 IPR033467 -
Psa3g3420 770 MobiDBLite consensus disorder prediction 1 25 - -
Psa3g3420 770 CDD SET_EZH 622 738 - -
Psa3g3420 770 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 17 769 - -
Psa3g3420 770 SUPERFAMILY SET domain 495 738 IPR046341 -
Psa3g3420 770 MobiDBLite consensus disorder prediction 1 16 - -
Psa3g3420 770 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 17 769 IPR045318 GO:0006338|GO:0018024
Psa3g3420 770 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 2 770 IPR025778 GO:0031519
Psa3g3420 770 MobiDBLite consensus disorder prediction 483 498 - -
Psa3g3420 770 Pfam CXC domain 561 593 IPR041355 -
Psa3g3420 770 Pfam SET domain 633 736 IPR001214 GO:0005515
Psa3g3420 770 Gene3D SET domain 523 739 IPR046341 -
Psa3g3420 770 ProSiteProfiles SET domain profile. 622 737 IPR001214 GO:0005515
Psa3g3420 770 SMART set_7 622 743 IPR001214 GO:0005515
Psa3g3420 770 ProSiteProfiles CXC domain profile. 499 608 IPR026489 -
Psa3g3420 770 MobiDBLite consensus disorder prediction 478 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3420 Psa-Chr3 289229646 289247567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3420 611 736 C2H2 Transcription Factor Family AT2G23740 29.371 1.35e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa3g3420 SET 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3420 - K11430 cam:101511861 941.799