Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3415 ATGGCTGGAGTAAGGGAACAAGACCAATACATGCCAATAGCGAACGTGATAAGAATAATGAGAAGGATTCTTCCATCACACGCCAAAATCTCCGACGATGCGAAAGAGACGATTCAAGAATGTGTATCTGAATACATAAGCTTCGTAACAGCAGAAGCAAACGAGCGGTGTCAAAGAGAACAGAGAAAAACCGTTACAGCAGAAGATTTGCTTTGGGCAATGGGGAAACTAGGGTTTGATGATTATGCTCATCCTTTAACATTTTACCTTCAACGTTACCGTGAAAGTGAAGGTGAACCTGCTTCTGTTCGACGCACTTCTTCTCTTGCTTTGCCTCCTCCTCTTCCAATGCCTCAGCAGCAGATTCCGTCGTTATCATCAATGCCGGTTCTTAATAATAATAGTAGTAATAGTTGTTATGGTTTTGGTTATGGTTTTGATTTTGATCAAGGGTTTGGTGGTGGTGATGGTAATCCTTCTTCTTCTGCTGCTGCTTTTGTACCTAACTTTGATTATTATCCTCATCTCAAACGTGATAATAACATGTGA 549 0.4098 MAGVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFVTAEANERCQREQRKTVTAEDLLWAMGKLGFDDYAHPLTFYLQRYRESEGEPASVRRTSSLALPPPLPMPQQQIPSLSSMPVLNNNSSNSCYGFGYGFDFDQGFGGGDGNPSSSAAAFVPNFDYYPHLKRDNNM* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3415 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Psa3g3415 182 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 123 - -
Psa3g3415 182 Gene3D Histone, subunit A 2 111 IPR009072 GO:0046982
Psa3g3415 182 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Psa3g3415 182 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Psa3g3415 182 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Psa3g3415 182 SUPERFAMILY Histone-fold 7 104 IPR009072 GO:0046982
Psa3g3415 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3415 Psa-Chr3 288635460 288636703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3415 4 114 CCAAT-HAP3 Transcription Factor Family AT5G47670 74.359 8.61e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa3g3415 CBFD_NFYB_HMF 2e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3415 K08065 - gmx:547959 215.698