Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3372 ATGTCAGCATCAGAGAATCGTCGAGAGAAGTTTACCGGCTTGACTCTTGAAGACGTATTGGCCAAAAGGAGATTAGACAATCCGGCAACAACACCTAACCAACCACCTCCATTAGACAATCCGGCAACAACACCTAACCAACCACCTCCATCCAAGAGTGGAACCTTATTTGACATTATCAGAGAAGATGATACCAACAGAAAAGACCGTAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGACTCAAGCGCGCTGGCTCTGCTTGGACATCATCAATTCATATTCCAACTTCAGACATCCCTGTCCAAAATCCAAACAGTAGAAGTTTTTCCCAATTAGGACGTCGCGACTCGGTTCGAATACAATCTCACCACGATTCAGACATGTCAACCCAGCCCATGACTCACCAAGTGGACGACCTTGACCCATCGGAGGGCAACCATGCTCCGGCCACTAAACCTCAGTTCAGTCGCCGAAGCTCCACCCGTTTCTCCGCCAACTCCCCAGACAATTTTCCTAGTGGGGCAAATCTCCGGCAACAACTCTCACGACGAAATTCCACCAATGTGTCGTCGGAGCCGTTTCACCGAGGACGTGTGGTGACTTTTCGGGACAGCTTCGATGATGATGAACCTGACGATGACGACAAGAACCTAGACATAGGGAGGACACTTTCAGCGAGGGAGGCTGTGGCAGCACAGGAGGCGGCAGAAGCTGCAGCAGTGGCAGATGCAGAAGCTTCAGGAGGGCATCCAACGATGATGTCGCTAATGGACTTACTGGAGGAGACTGATAGAGAGATGGGATTAGAAGGGTCAAGGTATGTATTGAGTGATGATGAAGACTTTGATGACGATGATGAAGGTGAAGATGATGATGAGCATGGAGAAGGTGCTATGGAAGGCACTTGTTGTATTTGCATGGTGAAGCACAAGGGTGCTGCTTTCGCACCTTGTGGCCACAGTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTGGCTAAGGGAAATTGTCCACTCTGCAATAATTTCATTACAGAGATTCTTGAGATATTCTGA 1059 0.4873 MSASENRREKFTGLTLEDVLAKRRLDNPATTPNQPPPLDNPATTPNQPPPSKSGTLFDIIREDDTNRKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPVQNPNSRSFSQLGRRDSVRIQSHHDSDMSTQPMTHQVDDLDPSEGNHAPATKPQFSRRSSTRFSANSPDNFPSGANLRQQLSRRNSTNVSSEPFHRGRVVTFRDSFDDDEPDDDDKNLDIGRTLSAREAVAAQEAAEAAAVADAEASGGHPTMMSLMDLLEETDREMGLEGSRYVLSDDEDFDDDDEGEDDDEHGEGAMEGTCCICMVKHKGAAFAPCGHSFCRMCSRELMVAKGNCPLCNNFITEILEIF* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3372 352 MobiDBLite consensus disorder prediction 122 176 - -
Psa3g3372 352 MobiDBLite consensus disorder prediction 30 48 - -
Psa3g3372 352 CDD RING-HC 304 341 - -
Psa3g3372 352 PANTHER OS01G0917900 PROTEIN 5 352 - -
Psa3g3372 352 SUPERFAMILY RING/U-box 303 348 - -
Psa3g3372 352 MobiDBLite consensus disorder prediction 1 77 - -
Psa3g3372 352 MobiDBLite consensus disorder prediction 1 24 - -
Psa3g3372 352 SMART ring_2 304 341 IPR001841 -
Psa3g3372 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Psa3g3372 352 MobiDBLite consensus disorder prediction 57 77 - -
Psa3g3372 352 ProSiteProfiles Zinc finger RING-type profile. 304 342 IPR001841 -
Psa3g3372 352 MobiDBLite consensus disorder prediction 150 176 - -
Psa3g3372 352 MobiDBLite consensus disorder prediction 278 295 - -
Psa3g3372 352 MobiDBLite consensus disorder prediction 275 295 - -
Psa3g3372 352 Pfam Zinc finger, C3HC4 type (RING finger) 302 347 - -
Psa3g3372 352 PANTHER OS01G0917900 PROTEIN 5 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3372 Psa-Chr3 284945570 284953456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3372 1 352 C3H Transcription Factor Family AT3G07120 37.831 2.23e-57 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3372 - - gmx:100795449 376.711