Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3363 ATGGCAGAAGCAGCAACTTCTTCGATGAGAAAGATCAAAAGGAAGAACCGAAGCCTAAAAACTCAGGACCCTGAGCTCGACCGTCTCGAATCACTTCCATGGAACTCTTCTCTCCCTCAACAGGATGAACAAGACGACAGCTCTTTTTCACTCTTCACTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCACTTGAGGAGATTGATGAAGCAGATTATGGTTTAAATATTCCCGATCCTGAAAATCATGACAGGAAACACAATTCTAAACAGAACAAGAAGTTGAATGAGCAGAAGCAAAACAGTACTTGTAGTGATGGAGAAACGGTGAATGATGAGAGCAGCAAGTCTAAAGTGAAGAAAAAGAAAAAGAAGAAAAGCAAGGATGCAAAAGAAAACCAGAAAGTTCAGCATTCAAATACTGCCGTAGATGCTGATGTGAAGGATGGTGTTGAGGAAGAGAGCTTTGACGAAACTGAATATTATGCATGGAACGAGTTGAGGCTTCATCCTCTTTTAATGAAAGCAATACACAAGTTGGGATTCAAGGAACCAACACCAATACAAAAAGCTTGTATTCCGGCTGCTGCTCATCAAGGGAAGGATGTTATTGGGGCTGCAGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGTCTTTTGGAGGAGCGTGAGAAAGCTGCAAATGTGGTCGGTGAAAAGGGCGAAGAAGTTGAAAAATATGCTTCCACGGGCCTTTTAAGGAGTCTTATTATTGCTCCAACTAGAGAACTTGCGCTTCAGGTCACTGATCATCTGAAAGCTGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGAGGTATTTTAGCAGAAAAGCAGGAAAGACTTTTAAAAGCAAGGCCTGAGATTGTGGTAGGTACTCCAGGGAGGTTATGGGAGCTTATGTCATCTGGAGAAAAGCATCTGGTTGAGTTACATTCGCTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAATGGTCATTTTAAGGAGTTGCAATCCATAATTGACATGCTTCCCATGTCTAATATCTCCAGTGAAAATAATTCTCAAGATGCACAAAGTTGTGTTACAGTTTCTAGTGTCCAAAGAAAGAAAAGGCAAACTCTTGTTTTCTCTGCAACTGTCGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGTAGTTCAATTCAGAAAAAGCAACCATCGACAGATAGTTTGGATTCTATTGAAACTCTTTCTGAAAGAGCGGGAATGAGACCCAATGCTGCAATTATTGATCTTACCAATCCATCAATATTAGCAGCCAAGATTGAGGAGTCATTTATTGAATGCACGGAAGACGACAAAGATGCCCATTTGTATTATATTCTCACTGTCCACGGACAAGGACGCACAATAGTCTTTTGTACGTCAATTGCAGCTTTGCGCCATATTTCTTCCATATTGCGCATTCTTGGCGTCAATGTTTGGACTCTTCATGCTCAAATGCAACAGCGAGCGCGTTTAAAGGCCATGGACCGCTTTCGTGAAAAGGAAAATGGCATTCTTGTTGCAACAGATGTTGCTGCAAGAGGTCTTGATATTCCCGGTATTAAAACTGTTGTCCATTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCCCCAAAAGATACATCGAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGATACTTTTCAGCGGTTTCCTTTGGAGAACTCATACATGCCAGAGATTCTAAAACGATTGTCTCTTGCTCGTCAAATAGACAAGATAACAAGGAAAGATTCCCAGGAGAAGGCAGAACAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGATTTAGTTACCGAAAATTATGACAGTGAGGAGGAACAAGTTAATAAACATAGGCAAAAGAAAGCCAGCTCTAAGAAATTGAAGAATTTGCAGACGGAGCTCAGTATGCTGATTTCACGTCCTCTGCAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCTGGTGTAACGCCCCTCGTGCAGGAACAATTGCAAGAATTAGCAAGGCAAAAATTAAGTGATCGCAAGGGTGCAGTATTCGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTGGATGCACTTCACGCACTTCGGAGTGCTGGTGAAGAGGTGCGCATGGATATCAAGGATTCAACAGGAAGACAAAGAAATGCCGTGAGTTCTAAGAGAAAAAGAAAAGAGGAAAAGACACGTTTGCGTGATCAGCGTAAAAAGAAGAAGAGAGATGTAAACCAAGACGATGAATAG 2394 0.4156 MAEAATSSMRKIKRKNRSLKTQDPELDRLESLPWNSSLPQQDEQDDSSFSLFTGSNELEGGFLSLEEIDEADYGLNIPDPENHDRKHNSKQNKKLNEQKQNSTCSDGETVNDESSKSKVKKKKKKKSKDAKENQKVQHSNTAVDADVKDGVEEESFDETEYYAWNELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEREKAANVVGEKGEEVEKYASTGLLRSLIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISSENNSQDAQSCVTVSSVQRKKRQTLVFSATVALSADFRKKLKRSSIQKKQPSTDSLDSIETLSERAGMRPNAAIIDLTNPSILAAKIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAMDRFREKENGILVATDVAARGLDIPGIKTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEILKRLSLARQIDKITRKDSQEKAEQSWFDRNASSVDLVTENYDSEEEQVNKHRQKKASSKKLKNLQTELSMLISRPLQSKTFSHRYLAGAGVTPLVQEQLQELARQKLSDRKGAVFGKKGKLVVIGQDCVDALHALRSAGEEVRMDIKDSTGRQRNAVSSKRKRKEEKTRLRDQRKKKKRDVNQDDE* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3363 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 585 IPR027417 -
Psa3g3363 797 SMART ultradead3 181 421 IPR014001 -
Psa3g3363 797 MobiDBLite consensus disorder prediction 73 144 - -
Psa3g3363 797 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 411 IPR014001 -
Psa3g3363 797 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 448 609 IPR001650 -
Psa3g3363 797 Coils Coil 645 665 - -
Psa3g3363 797 Pfam DEAD/DEAH box helicase 186 394 IPR011545 GO:0003676|GO:0005524
Psa3g3363 797 PANTHER RNA HELICASE 82 718 - -
Psa3g3363 797 SMART helicmild6 488 569 IPR001650 -
Psa3g3363 797 MobiDBLite consensus disorder prediction 756 797 - -
Psa3g3363 797 CDD DEADc_DDX24 173 438 - -
Psa3g3363 797 Pfam Helicase conserved C-terminal domain 460 568 IPR001650 -
Psa3g3363 797 Coils Coil 771 791 - -
Psa3g3363 797 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 82 718 - -
Psa3g3363 797 CDD SF2_C_DEAD 449 578 - -
Psa3g3363 797 MobiDBLite consensus disorder prediction 33 53 - -
Psa3g3363 797 Gene3D - 446 688 IPR027417 -
Psa3g3363 797 MobiDBLite consensus disorder prediction 1 53 - -
Psa3g3363 797 Gene3D - 109 410 IPR027417 -
Psa3g3363 797 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 162 190 IPR014014 GO:0003724
Psa3g3363 797 MobiDBLite consensus disorder prediction 76 94 - -
Psa3g3363 797 MobiDBLite consensus disorder prediction 95 110 - -
Psa3g3363 797 Coils Coil 2 22 - -
Psa3g3363 797 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 333 341 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3363 Psa-Chr3 284277656 284289594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3363 163 609 Eukaryotic Initiation Factors Gene Family AT5G11200 27.637 5.48e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3363 K14805 - gmx:100806018 1218.37