Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3342 ATGAGAAAAAAGAAATATGTTTGGAAAATGCTTTACATATACATGCTTGGTTATGATGTGGATTTTGGCTACATGGAGGTTGTTTCTCTTATATCTGCCTCAAAGAAAAATCCTGATGTTGTCAATATAGATGGATGGGCGGATCGAATGGCTCAACTTTTGGATGAACGAGACCTTGGTGTTTTAACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACCAACACGGGGACACTTCTGATAACAAATCTATGGAACATGATAATGTTTTTCATTCTATAAGCAATGCACAGTCAGGCATGAATCCCACATGTACACCAAATCAATGTTCCAAAAAGAAGTTTCCATTTCCCACTAAAAATCGCAAACATAGTGGTGTATCTGAAGGCACAGGCAGCCGGAGTGATGGAAATACCCCTCAGTCTGTTGTAGGCAAGAACCACCTTGAAAGTTCTATTAGTAATGATCACTATGACGAGCCTAGAGGCGCAAATTCTCACCACACCAACCAAAGAGAAGCAGCTCTACTAAAGTTTCGACTGAAGAGAAAAGACAGATGCTATGATAAAAAGGTCCAGTATGAAAGCCGGAAAAGACAAACAGATAAACGTCCACGGGTGAAAGGGCAGTTTGTTCGCCAATCTGTACAAGTTGATGCAAAATTTCTTAACAGTCAACATGAATTCTTTCCAGCCACCACCAAAGGTTCATCTAAAAGGAAGCTGCGCTCAAACCACCAATTGAATGTGTTGTTGTTCGTATTCAAATCATGCAACAAGCATGCCAATGCTCACCAAAATTTCTCTTCCCAGGCCAAATTTTTGAGCTCCAATTTCCTCTTTTCTGTCCCGACTAAGAAACCACAAGACGGGTCTGGTAATGGCAGGTTTGTAGTTCGACAAGGTCAAAATATTCCAAGTTCACAAGGAGGACAGTTGAGGAAGGGTCTGTCGACGACAAATGATGGAGCCGGTGGAAGGAAAGGAGGAGGACCAAGGAAGAAGGCGGTCACAAGATCCGTCAGAGCCGGACTTCAATTTCCAGTCGGAAGAATCGATCGATTTTTGAAGAAAGGTAGATATGCTCAGCGTGTTGGTACCGGTGCTCTTGTTTACTTGGCCGTTATTCTTGAATATCTTGTTGTTGAGGTCCTTGAGTTGGCTGGAAATGCAACACGGGATAACAAGAAGAAAAGTATCAGTCCAAGGAATTTGTTGTTGGCTGTGAGGAATGATGTAGAACTTGGAAAATTGCTGGCTGGTGTTACCATTGCTCACGGTGGTGTTCTCCCTAACATCAACCCAGTATTATTGCCTAAGAGAAATGAAAATGCTGCCAGTACTCCCAAGTCTCCATCAAAGGCCAAGAAATCTCCAAAGAAGGCAGTAGAAAAGAAAACTTTGTTACCAATCATGAAGCAACAATTTCATCAACTAGAAGCGAGCGGAGAAGCGCAGCAGCATGAAGGTCAATTAAAATTACATCAGCAGCAACGACAAATGATGGTGCATAACTCGAATGGAGATCAAAATCCAGTACAAGTTGTTGCCATGCGAATTGCATCCAGCAACG 1576 0.4207 MRKKKYVWKMLYIYMLGYDVDFGYMEVVSLISASKKNPDVVNIDGWADRMAQLLDERDLGVLTSSMSLLVALVSNQHGDTSDNKSMEHDNVFHSISNAQSGMNPTCTPNQCSKKKFPFPTKNRKHSGVSEGTGSRSDGNTPQSVVGKNHLESSISNDHYDEPRGANSHHTNQREAALLKFRLKRKDRCYDKKVQYESRKRQTDKRPRVKGQFVRQSVQVDAKFLNSQHEFFPATTKGSSKRKLRSNHQLNVLLFVFKSCNKHANAHQNFSSQAKFLSSNFLFSVPTKKPQDGSGNGRFVVRQGQNIPSSQGGQLRKGLSTTNDGAGGRKGGGPRKKAVTRSVRAGLQFPVGRIDRFLKKGRYAQRVGTGALVYLAVILEYLVVEVLELAGNATRDNKKKSISPRNLLLAVRNDVELGKLLAGVTIAHGGVLPNINPVLLPKRNENAASTPKSPSKAKKSPKKAVEKKTLLPIMKQQFHQLEASGEAQQHEGQLKLHQQQRQMMVHNSNGDQNPVQVVAMRIASSN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3342 525 MobiDBLite consensus disorder prediction 125 144 - -
Psa3g3342 525 Pfam Core histone H2A/H2B/H3/H4 335 411 IPR007125 GO:0003677
Psa3g3342 525 ProSiteProfiles CCT domain profile. 173 215 IPR010402 GO:0005515
Psa3g3342 525 PANTHER HISTONE H2A 309 460 - -
Psa3g3342 525 MobiDBLite consensus disorder prediction 444 464 - -
Psa3g3342 525 Pfam C-terminus of histone H2A 415 447 IPR032454 -
Psa3g3342 525 MobiDBLite consensus disorder prediction 115 144 - -
Psa3g3342 525 PANTHER HISTONE H2A 309 460 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa3g3342 525 CDD H2A 337 441 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa3g3342 525 PRINTS Histone H2A signature 336 358 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa3g3342 525 PRINTS Histone H2A signature 365 380 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa3g3342 525 PRINTS Histone H2A signature 380 393 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa3g3342 525 PRINTS Histone H2A signature 408 420 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa3g3342 525 PRINTS Histone H2A signature 422 440 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa3g3342 525 Pfam CCT motif 173 215 IPR010402 GO:0005515
Psa3g3342 525 Gene3D Histone, subunit A 323 452 IPR009072 GO:0046982
Psa3g3342 525 SUPERFAMILY Histone-fold 327 442 IPR009072 GO:0046982
Psa3g3342 525 ProSitePatterns Histone H2A signature. 344 350 IPR032458 -
Psa3g3342 525 Gene3D - 1 36 IPR011989 -
Psa3g3342 525 MobiDBLite consensus disorder prediction 304 337 - -
Psa3g3342 525 SMART h2a4 325 445 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa3g3342 525 MobiDBLite consensus disorder prediction 304 320 - -
Psa3g3342 525 SUPERFAMILY ARM repeat 3 75 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3342 Psa-Chr3 283230002 283232920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3342 113 221 Response Regulator Gene Family AT2G46790 44.144 6.03e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa3g3342 Histone 4.5e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3342 K11251 - sspl:121793455 192.586