Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3315 ATGGAGAACACCGCTTTCACAATTCCAAACTTTTCTGACGAAGAAGATGAAGAAGTCCCTGATTCCTTTTCTTGCTGCGTTTGTTTGGATCTATTATACAAGCCCATTGTACTATCTTGTGGTCACATATGTTGTTTCTGGTGTGTCTATAAATCAATGAATTGTCTGCGCGAGTCTCAGTGTCCAACATGTAGGCATCAATACTATCACTTCCCAACAGTCTGTCAAGCGCTTCATTTTTTGCTTCTTAAGATGTATCCCGTTGCTTACAATAGAAGGATCAATCAAACTCTTGAGGAAGAGAAGAAATCAGGCTTCTATTCCCCTCAATTTGATCCCGACACATGTGAATCACAAGCTAAATTTGGTCATTCATGTAGCCCTTCTTCCTCCTCAAAGATGAATCTGGTGCCCAACTCATGCAATGTGGAAACTTTTGAATGTACAAAGCAACCAGAGTTCACTGCCCATAAAGCAGAGCCTGAAACTACTGGGACTCCGGCTGAAGAAAAAACATTGCCTCATGATAAGCTTGACATAAAACAAAAAATATCAGTTGCTGATGTGATGTGTACAATGTGCAAGCAGCTTCTTTTTCGTCCTGTAGTTCTTAATTGTGGTCACGTATACTGTGAAACTTGTGTCTACAAGTTAGCTGATGAGATGCTTAGATGCGAAGTTTGTCAAAGTCCACACCCAAGAGGATTTCCGAAAGTGTGTTTGGAGTTTAATCACTTTTTGGAGGAACAATTTGCTGAAGAATATGCACGGCGAAGCGATGCTATTGAACTAAAGGAAATCAAAGTCAAACCCGAGACCCCTTCTTGTTCATTGGATAACGGTAACAAAGGAGAAAGTACAGAATGGTGGTCTGATCCTGACTTGAAAGTTCACATTGGAGTTGGTTGTGACTTTTGTGGGATGTTTCCTATCATTGGAGATAGATATAGATGCACCGATTGCAAGGAGAAAATGGGTTTCGATCTTTGTAAAGATTGCTACGACACACGCTCCAAACTTCCAGGCCGATTTAATCAACAACACACCTCAGATCATAGTTTCAAGCTTGTACAACCCAACTATATTCGTAACATAATGTTGAGGCTGGTCACCGGACAGTTAGGCGACAGGTCTATCGACACCGAGTCTTTAAGTAACATAGATTTTACAGCCGAAGCCTCTGGGTTGTTTGATGACGGTGAAGATAACCAGAATGACCCCGAAGCTACCGATTGA 1236 0.4142 MENTAFTIPNFSDEEDEEVPDSFSCCVCLDLLYKPIVLSCGHICCFWCVYKSMNCLRESQCPTCRHQYYHFPTVCQALHFLLLKMYPVAYNRRINQTLEEEKKSGFYSPQFDPDTCESQAKFGHSCSPSSSSKMNLVPNSCNVETFECTKQPEFTAHKAEPETTGTPAEEKTLPHDKLDIKQKISVADVMCTMCKQLLFRPVVLNCGHVYCETCVYKLADEMLRCEVCQSPHPRGFPKVCLEFNHFLEEQFAEEYARRSDAIELKEIKVKPETPSCSLDNGNKGESTEWWSDPDLKVHIGVGCDFCGMFPIIGDRYRCTDCKEKMGFDLCKDCYDTRSKLPGRFNQQHTSDHSFKLVQPNYIRNIMLRLVTGQLGDRSIDTESLSNIDFTAEASGLFDDGEDNQNDPEATD* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3315 411 SUPERFAMILY RING/U-box 292 357 - -
Psa3g3315 411 ProSiteProfiles Zinc finger RING-type profile. 191 229 IPR001841 -
Psa3g3315 411 SMART ring_2 191 228 IPR001841 -
Psa3g3315 411 SMART ring_2 25 64 IPR001841 -
Psa3g3315 411 Pfam Zinc finger, ZZ type 299 338 IPR000433 GO:0008270
Psa3g3315 411 Pfam RING-type zinc-finger 191 215 IPR027370 -
Psa3g3315 411 SUPERFAMILY RING/U-box 186 232 - -
Psa3g3315 411 CDD RING-HC 25 64 - -
Psa3g3315 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 285 IPR013083 -
Psa3g3315 411 ProSiteProfiles Zinc finger ZZ-type profile. 298 362 IPR000433 GO:0008270
Psa3g3315 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 109 IPR013083 -
Psa3g3315 411 SUPERFAMILY RING/U-box 17 76 - -
Psa3g3315 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 12 406 - -
Psa3g3315 411 ProSitePatterns Zinc finger RING-type signature. 206 215 IPR017907 -
Psa3g3315 411 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Psa3g3315 411 Gene3D - 293 357 IPR043145 -
Psa3g3315 411 PANTHER UNCHARACTERIZED 12 406 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3315 6 65 C3H Transcription Factor Family AT1G74990 37.705 4.03e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3315 - - gmx:100787174 656.366