Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3314 ATGAAGCCAAGTTTGGGTCAGGCTCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTATTTTCTGAAAAGGAAGTTACACGCCACCGCGAAAATTTTTATGACAGAAGGGAAAGTTTCCACGGATCCAGTAGCAATTGATGCACCTGGCGGATTTCTTTTTGAGTGGTGGTCGGTCTTTTGGGATATATTCATCTCGAGGACAAATGAGAAACATTCGGAGGCTGCTGTATCTTATATTGAGACCCAGCAAACAAAGGCCAGAGAACAACTTCAAATGCAGCAAATGCAACTAATGCAGCAGCGAAATGCACAGTTACAGCGAAGAGATCCCAATCATCCTGCACTTGGTGGTTCCTTAAACGCCATGAACTCTGAAGGTATGTTGGGGCAGCCACCAGCTAGTGTGTTGGCCATGAAAATGTATGAAGAGCGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAGCTCTTATTGATGCAAATAGGATGGCTCTTCTCAAACCAGCAACAAGTCATCAAGGTCAGTTGGTTCATGGTAATTCAGGGAATATGTCCACAGCATTGCAGCAAATGCAAGCACGGTCATCTTTGAATGCTGATATCAAAGGAGAAGTTAACATCGGCGCCAGTCCAAAGAATTTGCCTATGGATTCATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGTTAGGCAGTGGAGGATTAAACCAAGGAGTTACAGGTCTTCCGTTGAAGGGATGGCCTCTAACTGGTATTGATCAACTAAGACCTGGTTTGGGCGTACAAGTTCAGAAGCCTAATTTGACAGCACAAAACCAGTATCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAAAACAACCTTGGAAATTCTAATTATGGTGATATGGATCCGCGGAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTAACAGAAATGATGGATCTATTTGCTCCCAAATGCAATCAGGTTCACCCAAGATGAAGATGACCCAGTCCCAACAATCATTATCTCAGCAGCAAGAGCAATTGCAGCAGCAGCATCAACTGCAGCAGAGTAACAGAAAACGAAAGCAAGCTTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACCGCTGGTCCTTCCCCTAATTCGCCGTCATCAACACACACACCTGGTGATGGATTAAATACAGCAAGCAGCCTGCAGCATGTTAACAATGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTGGCATCATCTTCAAATTTACTGGATGATATAGAACGATTTGGAGATGTCGGTGCTTTAGATGATAACGTGGAATCCTTTCTATCAAATGACGGAGGAGATGGTGGCAATCTCTATGGGGCTATAAAACAAAGTCCGGCTGAGCAACAAAAAGAATCTTCAAAAGGTTTCACCTTTGCCGAATTTGGTTGCATAAGAACAAGGAACACAGTTACTTGCTGTCACTTTTCTTCAGATGGAAAGTTGCTAGCCAGTGCCGGGGATGACAAGAAGGTTGTCCTTTGGAATATGGACACTTTAGGGACAGAGAGCACTCCTGAAGAACACAAATTGGTTATTACAGATGTTCGTTTTAGACCAAATTCATCTCAGTTGGCGACTGCCTCATGTGACAAATCTGTGCGGTTATGGGACGCAGCCAATCCAACCTATTGTGTTCAAGAATATAGCGGGCACAGTTCAGCTATTATGTCCCTTGATTTCCACCCTAAGAAGACTGATATTTTCTGCTTCTGCGATACAGAAAATGAAATTCGGTATTGGAACATTACTTCATCCTCTTGTACCCGTGTATCTAAGGGAGGTAGTGCAAAAGTGAGGTTTCAGCCTCGATTGGGACAGTTACTTGCAGCAGCTTCTGATAAAGTGGTGTCTATTTTCGACGTCGAAACTGACAGACAAATTTACCAACTCCCGGGTCATCCTGAACCGATAAACAATATTTGCTGGGATGCTACTGGAGATATGTTGGCATCTGTTAGTCCAAATTCGGTGAAGATCTGGAATTTGACATCAGGAGATTGCGTTCAGGAGCTCAACTCCACCGGGAACCAGTTTTATTCCAGTGTTTTTCATCCAAGCTATTCAACTTTATTAGTAGTCGGAGGGTTTTCGTCCATAGAGTTGTGGAACATGGCTGAGAACAAGAGCATGACAATTCCTGCACATGACAATGTGATATCTGCATTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCTGCGAGTCGCGACAACGCCGTAAAGCTGTGGAAATAA 2355 0.4386 MKPSLGQAQSNWEADKMLDVYIHDYFLKRKLHATAKIFMTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAAVSYIETQQTKAREQLQMQQMQLMQQRNAQLQRRDPNHPALGGSLNAMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPALIDANRMALLKPATSHQGQLVHGNSGNMSTALQQMQARSSLNADIKGEVNIGASPKNLPMDSSVYRQAILQSKSGLGSGGLNQGVTGLPLKGWPLTGIDQLRPGLGVQVQKPNLTAQNQYLLASQQQQVLAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLNAKDGQSNRNDGSICSQMQSGSPKMKMTQSQQSLSQQQEQLQQQHQLQQSNRKRKQASSSGAANSTGTGNTAGPSPNSPSSTHTPGDGLNTASSLQHVNNVQKSMMMYGTEATGGLASSSNLLDDIERFGDVGALDDNVESFLSNDGGDGGNLYGAIKQSPAEQQKESSKGFTFAEFGCIRTRNTVTCCHFSSDGKLLASAGDDKKVVLWNMDTLGTESTPEEHKLVITDVRFRPNSSQLATASCDKSVRLWDAANPTYCVQEYSGHSSAIMSLDFHPKKTDIFCFCDTENEIRYWNITSSSCTRVSKGGSAKVRFQPRLGQLLAAASDKVVSIFDVETDRQIYQLPGHPEPINNICWDATGDMLASVSPNSVKIWNLTSGDCVQELNSTGNQFYSSVFHPSYSTLLVVGGFSSIELWNMAENKSMTIPAHDNVISALAQSPVTGMVASASRDNAVKLWK* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3314 784 MobiDBLite consensus disorder prediction 342 410 - -
Psa3g3314 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 630 IPR001680 GO:0005515
Psa3g3314 784 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Psa3g3314 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 577 IPR001680 GO:0005515
Psa3g3314 784 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 784 IPR044716 GO:0003714
Psa3g3314 784 SUPERFAMILY WD40 repeat-like 507 784 IPR036322 GO:0005515
Psa3g3314 784 SMART WD40_4 704 743 IPR001680 GO:0005515
Psa3g3314 784 SMART WD40_4 663 701 IPR001680 GO:0005515
Psa3g3314 784 SMART WD40_4 745 784 IPR001680 GO:0005515
Psa3g3314 784 SMART WD40_4 500 535 IPR001680 GO:0005515
Psa3g3314 784 SMART WD40_4 624 660 IPR001680 GO:0005515
Psa3g3314 784 SMART WD40_4 581 621 IPR001680 GO:0005515
Psa3g3314 784 SMART WD40_4 538 577 IPR001680 GO:0005515
Psa3g3314 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 710 IPR001680 GO:0005515
Psa3g3314 784 Gene3D - 481 638 IPR015943 GO:0005515
Psa3g3314 784 Pfam WD domain, G-beta repeat 508 535 IPR001680 GO:0005515
Psa3g3314 784 Pfam WD domain, G-beta repeat 667 701 IPR001680 GO:0005515
Psa3g3314 784 Pfam WD domain, G-beta repeat 749 784 IPR001680 GO:0005515
Psa3g3314 784 Pfam WD domain, G-beta repeat 546 577 IPR001680 GO:0005515
Psa3g3314 784 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 784 - -
Psa3g3314 784 Pfam LisH 16 42 IPR006594 GO:0005515
Psa3g3314 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 784 - -
Psa3g3314 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 784 IPR001680 GO:0005515
Psa3g3314 784 CDD WD40 510 784 - -
Psa3g3314 784 Coils Coil 348 368 - -
Psa3g3314 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 577 - -
Psa3g3314 784 Gene3D - 639 784 IPR015943 GO:0005515
Psa3g3314 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 508 544 IPR001680 GO:0005515
Psa3g3314 784 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Psa3g3314 784 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Psa3g3314 784 PRINTS G protein beta WD-40 repeat signature 771 784 IPR020472 -
Psa3g3314 784 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3314 Psa-Chr3 281410344 281417024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3314 583 783 Miscellaneous Gene Families AT5G08390 21.845 1.97e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Psa3g3314 WD40 0.056 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3314 - - gmx:100799686 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3314 3 281410344 281417024 Psa3g3314 3 281410344 281417024 ECH