LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa3g3311	ATGAAAAATATGGATTTCTCATTCACACTATTTCTTCTACTATTATCCTTTTCTTTCCAATCTTCATCTTCTTCATCTTCATCATCATCATCATCCTTGAGAAAAGGTTCATCCCTCTCAGTAGAAAAACCAGAAGACAAAATCATCTCACCAAATGGCATCTTCACTGCTGGCTTTACTTCCATTGGTGATAATGCATACTCCTTTGCCATATGGTTCACACAACCAAATTCCCTCAAACTCAACAACACAATCATTTGGACGGCGAATCGCGACCAACCGGTTAACGGAAAAAGATCCAAACTCACCCTTTTAAACACAGGAAACATTGTTTTGCTTGATGTTTCTCTAAACAATGTTTGGTCTTCAAACACTGCATCATTGAAACCATTAGTGTTACATCTCAAAAACGATGGAAATCTTGTGTTGCGTGAGCTTCAAGGAACCAAAACTCTATGGCAGAGTTTTGATTCTCCAACCGATACTCTCCTTCCTGGTCAACCGCTTACAAGATACACAAAGCTTGTAGCTTCCATAAGTGAGACTAATCATTCATCTGGCTTCTACACGTCGTTTTTCGACGATGAAAATATTTTCGGTCTTCATTACGACGGCCGCGATGTTTCTAGCTCCTATTGGCCAAGGCCATGGCTTCTAAGTTGGGATGTTGGCAGATCAAATTTCAATAGTAGCAGAACTGCAGTGTTGGACTCTCTTGGTAATTTCCATTCATCAGATAATTTCACTTTTTCAACTTCTGATTATGGATCTGTGCTGCAAAGAATAATGAAACTTGATTCTGATGGTATTGTGAGAGTTTATAGCAGAAATAATGTGTCAAAGAATTGGTATGTTTCATGGCAAGCCTTTTCTGGTGCTTGTTTGGTTCATGGAATTTGTGGAGCTAATAGTACATGTAGTTATAGTCCTAAGTATGGAAGAAAGTGCTCTTGTATTCCAGGGTATAAGATGAAGAATCATAATGATTGGTCTTATGGTTGTGAACCTATGTTTGATTTCACTTGCAATAAAAGTGAGTCAACCTTTTTAGAGATGAAGAATGTTGAGTTTTATGGTTATGACTTTCATTATATTGAAGTTTGTAACTATAGTACTTGTGAGGATTTATGCATACAAGATTGTAATTGTGTAGCATTTCAACATTCATTTTGGGAGAAAAAGGGGTTTTATAGGTGTTTTACAAAAACACAATTGCAAAATGGAAGGCTTATACCTTCCTTTAAAGGATCAACCTACTTGAGATTACTTAGAGGTAATAGCTTCTCTAGAGAAGAATCTTCTTTTCCAAGTAATCATGTTTGTTTAGAAAAACTTCAAAGAGTTTATGTCAAAGAAAGTGAAAACCAATACGTGAAGTTTTTTCTCTGGTTCGTTACTGCGAGCGGAGCTTTTGAAATGGTATGTATTTTTGCGGTTTGGTGTTCCCTATGCAGGTCGCGCCAAAAGACTAATGCAGACCAACACGGCTACCACCTTGCTGAAATAGGGTTTAGAAAATTCAGTTACTTGGAGCTCAAGAAAGCGACAAAAGGGTTCAGTCAAGAGATCGGAAGAGGCGGGGGAGGCGTTGTATACAAAGGCGTATTATCTGATCAAAGACACGCCGCGATAAAGAGACTTTACAATGCTCAACAAGGAGAAGGTGAGTTTCTCGCAGAAGTAGGCATCATTGGAAGACTTAATCACATGAATTTGATCGAAATGTGGGGATATTGTGCCGAGGGAAAGTATAGACTATTGGTATATGAGTACATGGAAAATGGTTCTTTATCCGAAAATCTATCATCTAATAAACTTGATTGGAGTAAAAGGTACAAAATTGCTTTAGCAATAGCAAGAGTTCTAGCTTATCTACATGAAGAATGTTTGGAGTGGATTTTACATTGTGATATAAAGCCACAAAACATACTTCTTGACTCTAACTTCCAACCCAAGTTAGCTGATTTTGGATTGTCTAAGCTACAAAATAGAAACAATGTCAAGAACTTAAGTGTATCTACGATTCGAGGAACAAGAGGGTACATGGCACCCGAATGGATTTTCAACTTGCCAATAACATCAAAAGTTGATGTTTATAGCTATGGAATAGTTGTGTTGGAGATGATAACAGGTATTGAAGCTTGTTTATCCATAATACGGAGTGGGAGAAGAACTTCATTCACCTACAATCATAAGGTCATAGATAGTTGTTTTCAGTGTATTGTGCATCATGGACGTGAGTTTGATGAGTTCAAAAAAACAGGTTATAACGGGTTAGAGGAAACTTGGGATGCTGATCATGATTTTCAGAGTTACTTTGAAATTCTACGTGAGTTAAAGGGTTTAGGTTATCCTAGTGTAGATAACCTTTGGTATTACGATAAAATGGAGTTTAATAACATGGTTTTGTTGAAAGGTGATAATGGAACCAAGTCAGACAACTCATCCTGCACCAGGTCATCCTGGACCAAGTCATCCTGA	2481	0.3753	MKNMDFSFTLFLLLLSFSFQSSSSSSSSSSSSLRKGSSLSVEKPEDKIISPNGIFTAGFTSIGDNAYSFAIWFTQPNSLKLNNTIIWTANRDQPVNGKRSKLTLLNTGNIVLLDVSLNNVWSSNTASLKPLVLHLKNDGNLVLRELQGTKTLWQSFDSPTDTLLPGQPLTRYTKLVASISETNHSSGFYTSFFDDENIFGLHYDGRDVSSSYWPRPWLLSWDVGRSNFNSSRTAVLDSLGNFHSSDNFTFSTSDYGSVLQRIMKLDSDGIVRVYSRNNVSKNWYVSWQAFSGACLVHGICGANSTCSYSPKYGRKCSCIPGYKMKNHNDWSYGCEPMFDFTCNKSESTFLEMKNVEFYGYDFHYIEVCNYSTCEDLCIQDCNCVAFQHSFWEKKGFYRCFTKTQLQNGRLIPSFKGSTYLRLLRGNSFSREESSFPSNHVCLEKLQRVYVKESENQYVKFFLWFVTASGAFEMVCIFAVWCSLCRSRQKTNADQHGYHLAEIGFRKFSYLELKKATKGFSQEIGRGGGGVVYKGVLSDQRHAAIKRLYNAQQGEGEFLAEVGIIGRLNHMNLIEMWGYCAEGKYRLLVYEYMENGSLSENLSSNKLDWSKRYKIALAIARVLAYLHEECLEWILHCDIKPQNILLDSNFQPKLADFGLSKLQNRNNVKNLSVSTIRGTRGYMAPEWIFNLPITSKVDVYSYGIVVLEMITGIEACLSIIRSGRRTSFTYNHKVIDSCFQCIVHHGREFDEFKKTGYNGLEETWDADHDFQSYFEILRELKGLGYPSVDNLWYYDKMEFNNMVLLKGDNGTKSDNSSCTRSSWTKSS*	827

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa3g3311	826	Gene3D	-	24	157	IPR036426	-
	Psa3g3311	826	SMART	blect_4	30	159	IPR001480	-
	Psa3g3311	826	Pfam	Protein kinase domain	520	715	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa3g3311	826	CDD	B_lectin	50	159	IPR001480	-
	Psa3g3311	826	ProSiteProfiles	PAN/Apple domain profile.	342	423	IPR003609	-
	Psa3g3311	826	PANTHER	SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN	4	714	-	-
	Psa3g3311	826	SUPERFAMILY	alpha-D-mannose-specific plant lectins	85	176	IPR036426	-
	Psa3g3311	826	Pfam	S-locus glycoprotein domain	244	325	IPR000858	GO:0048544
	Psa3g3311	826	ProSiteProfiles	Bulb-type lectin domain profile.	24	156	IPR001480	-
	Psa3g3311	826	Gene3D	Phosphorylase Kinase; domain 1	481	591	-	-
	Psa3g3311	826	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	4	714	-	-
	Psa3g3311	826	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	633	645	IPR008271	GO:0004672\|GO:0006468
	Psa3g3311	826	ProSitePatterns	Protein kinases ATP-binding region signature.	523	545	IPR017441	GO:0005524
	Psa3g3311	826	Pfam	D-mannose binding lectin	84	171	IPR001480	-
	Psa3g3311	826	Gene3D	Transferase(Phosphotransferase) domain 1	592	765	-	-
	Psa3g3311	826	PIRSF	SRK	1	745	IPR024171	GO:0004674
	Psa3g3311	826	SMART	serkin_6	517	752	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa3g3311	826	ProSiteProfiles	Protein kinase domain profile.	517	770	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa3g3311	826	SUPERFAMILY	Protein kinase-like (PK-like)	496	715	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa3g3311	Psa-Chr3	281285922	281289625	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa3g3311	506	711	Receptor kinase-like Gene Family	AT5G20050	46.119	2.50e-55	196

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Psa3g3311		Pkinase	2.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa3g3311	-		-	gmx:100783758	1001.89