Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3306 ATGAGTTGCTTTTCATGTTTCTCAAACCAAGAAAAGAAAGTACCAAGGAGGCCTAATAACAACAATAAAAACAATGAAAAGAGGATGCAATATCCTCCTACTCAAATATCTCCTAAGAAAGCACCTCAACCTCAACCTCATCAACAAGATAATCATTATCGCAGGGCAAGGTCAAGCCCACAAGGAGAACCTAAAATAAATAAAGAGGCTAAGAAAGAAAATGGTAGTGGTAACCACATTTCTGCACAATCATTCACATTCAGAGAATTGGCTTCTATCACAAGGAACTTTAGACAAGAAAATCTAATAGGTGAAGGTGGTTTTGGAAGAGTTTATAGAGGAAGACTTGAAAAAACAAACCAGGAAGTAGCTGTGAAGCAACTTGACAGGAATGGATTGCAAGGGAATAGAGAATTTCTTGTTGAAGTTTTGATGCTAAGCCTCTTACACCATCGTAATCTAGTGAATCTAATTGGATATTGTGCTGATGGAGAGCAAAGACTATTGGTATATGAGTACATGCCATTAGGATCTCTTGAAGATCATCTACTAGATCTTCCTCCAAAACAAAAGCCATTAGAATGGTTGAAAAGAATGAAAGTAGCACTAGATGCTGCAAAAGGTTTAGAATATTTGCATGATAGAGCGAATCCACCAGTGATATACCGCGACTTGAAATCCTCCAACATTTTACTGGACAATGATTTTAATGCAAAACTCTCTGATTTTGGATTGGCTAAACTTGGACCTACAGGTGACAAGTCGCATGTTTCTTCAAGAGTAATGGGAACTTACGGATACTGTGCACCTGAGTATCAAAGAACTGGTCAACTCACTGTTAAATCAGATATTTACAGTTTTGGTGTTGTTTTGCTTGAATTGATTACTGGTAGGAGAACTATTGATAACACAAGACCTTTAAAGGAGCAAAATCTTGTTTATTGGGCGTATCCGGTACTCAGGGAACCACCTAGGTATACAGAATTGGCAGATCCAAAACTTGAAGGAAGCTTTCCAATGAGATCATTACATCAAGCAGTGGCAATAGCAGCAATGTGCCTAAACGAAGAACCATCAGTGAGACCATTGATAAGTGATGTTGTAACAGCTCTTAGTTTCCTTAATCCAATGAATCAAGATCAACCAGTTTTGTCACCGGTTGATATGCCATCACCAACACAAGAAAATAGCGCAGTGTTGAGTCTTCTTGACGATGACAGTGCCGTCGAACGACAAAAAGCCCTTGATGAAGCCATTGAATGGGGTTCAAATACTAGGAATAAACCAAGGCATGACACTGCTTTATCTATGTAA 1314 0.3858 MSCFSCFSNQEKKVPRRPNNNNKNNEKRMQYPPTQISPKKAPQPQPHQQDNHYRRARSSPQGEPKINKEAKKENGSGNHISAQSFTFRELASITRNFRQENLIGEGGFGRVYRGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHRNLVNLIGYCADGEQRLLVYEYMPLGSLEDHLLDLPPKQKPLEWLKRMKVALDAAKGLEYLHDRANPPVIYRDLKSSNILLDNDFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDIYSFGVVLLELITGRRTIDNTRPLKEQNLVYWAYPVLREPPRYTELADPKLEGSFPMRSLHQAVAIAAMCLNEEPSVRPLISDVVTALSFLNPMNQDQPVLSPVDMPSPTQENSAVLSLLDDDSAVERQKALDEAIEWGSNTRNKPRHDTALSM* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3306 437 Gene3D Phosphorylase Kinase; domain 1 66 173 - -
Psa3g3306 437 MobiDBLite consensus disorder prediction 50 75 - -
Psa3g3306 437 Gene3D Transferase(Phosphotransferase) domain 1 174 385 - -
Psa3g3306 437 CDD STKc_IRAK 103 371 - -
Psa3g3306 437 MobiDBLite consensus disorder prediction 1 15 - -
Psa3g3306 437 SUPERFAMILY Protein kinase-like (PK-like) 83 399 IPR011009 -
Psa3g3306 437 ProSiteProfiles Protein kinase domain profile. 97 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g3306 437 PANTHER OS07G0668900 PROTEIN 2 428 - -
Psa3g3306 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Psa3g3306 437 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Psa3g3306 437 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 2 428 - -
Psa3g3306 437 MobiDBLite consensus disorder prediction 1 81 - -
Psa3g3306 437 Pfam Protein kinase domain 98 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g3306 437 SMART serkin_6 97 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3306 Psa-Chr3 281127976 281131311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3306 1 434 Glycoside Hydrolase AT3G07070 62.014 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Psa3g3306 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3306 - - gmx:100786405 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3306 3 281127976 281131311 Psa3g3306 3 281127976 281131311 ECH
Psa3g3306 3 281127976 281131311 Psa5g6461 5 546876587 546878675 ECH