Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3286 ATGGTAGTGATAGAGCAGGAGAAGACCGACGATCGAAACGCGAATCTATCAAACGCTACTGCCGGCAACGACGCCTCCGACGGCTTCGAAACCGCCAGTGAGGCCGATCTCGATAGCGACGGTGACGAAGGCGGAGCAAGCAGCCGAGAAGAATTGCAGCACCGCGAGAAACCGCAGCAGCCGCCGAAGCGGACAGAGGGAGAACAAGGACAAGATGTTCCTCAGAGAAGCATTTCCTCCGAAGATGCTTTGATCAATGAAGATGAATTGAGACAGAAAGCATTGGATGAAGCAAATGAAGCAAAAGTAGAAGGTAACAAAGTCTTTGTAGATGGGAAGTATGAGGAGGCATTATCTCAATATGAACATGCTTTACAAGTTGCACTAGACATGCCTTCATTTGTGGAAATACGCTCAATATGCTATGCAAACCGTGCTGTGTGTTTTTTAAAACTGGGAAAATATGAAAATACAATTAAAGAATGCACAAAAGCATTGGAGCTGAATCCTGCATATGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGGTCAAGCTAGGAAAGCCATCCGTCGACTAGAGCCCCTTGCTGCAGTCAAACGAGAAAAAATGAAAGAAGAAATGATAGCAAAATTGAAAGAAATGGGTAATTCTGTCTTGGGACGCTTTGGGATGAGCGTTGACAACTTCAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCAATGGAACGCTAA 813 0.4367 MVVIEQEKTDDRNANLSNATAGNDASDGFETASEADLDSDGDEGGASSREELQHREKPQQPPKRTEGEQGQDVPQRSISSEDALINEDELRQKALDEANEAKVEGNKVFVDGKYEEALSQYEHALQVALDMPSFVEIRSICYANRAVCFLKLGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNGQARKAIRRLEPLAAVKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISMER* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3286 270 Pfam Tetratricopeptide repeat 141 171 IPR001440 GO:0005515
Psa3g3286 270 MobiDBLite consensus disorder prediction 42 63 - -
Psa3g3286 270 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 10 269 - -
Psa3g3286 270 MobiDBLite consensus disorder prediction 1 84 - -
Psa3g3286 270 MobiDBLite consensus disorder prediction 13 27 - -
Psa3g3286 270 SMART tpr_5 139 172 IPR019734 GO:0005515
Psa3g3286 270 SMART tpr_5 98 131 IPR019734 GO:0005515
Psa3g3286 270 SMART tpr_5 173 206 IPR019734 GO:0005515
Psa3g3286 270 Gene3D Tetratricopeptide repeat domain 62 238 IPR011990 GO:0005515
Psa3g3286 270 ProSiteProfiles TPR repeat profile. 173 206 IPR019734 GO:0005515
Psa3g3286 270 Pfam Tetratricopeptide repeat 174 206 IPR013105 -
Psa3g3286 270 SUPERFAMILY TPR-like 94 215 IPR011990 GO:0005515
Psa3g3286 270 ProSiteProfiles TPR repeat profile. 139 172 IPR019734 GO:0005515
Psa3g3286 270 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 10 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3286 Psa-Chr3 278626235 278632375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3286 74 240 Calmodulin-binding Proteins AT3G25230 35.165 4.10e-18 82.0