Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3284 ATGTCTGACCAAAGAAACTCAAGAGATCCAAAGATGAAAGAGAAACAGATTAATGATCTTGTGTCAAGGTTACAACTTCTACTTCCTCAACTTAACCAAAGAAACACCTCAAGGCAATCAGCGTCGAAGATCTTGCAGGAAACTTTGAATCACATTAGGAGGTTGCAGAAAGAGGTAGAAGATCTCAGTGAAAGGCTAACACAGTTGATGGATTCTGTGGATTTTAATGATAATGACAGAAGAAATTTGGAGAACTTTTTGCAATATTAA 270 0.3667 MSDQRNSRDPKMKEKQINDLVSRLQLLLPQLNQRNTSRQSASKILQETLNHIRRLQKEVEDLSERLTQLMDSVDFNDNDRRNLENFLQY* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3284 89 PANTHER DNA BINDING PROTEIN 1 88 - -
Psa3g3284 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 72 IPR036638 GO:0046983
Psa3g3284 89 Pfam Helix-loop-helix DNA-binding domain 15 56 IPR011598 GO:0046983
Psa3g3284 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 55 IPR011598 GO:0046983
Psa3g3284 89 PANTHER DNA BINDING PROTEIN 1 88 IPR044172 -
Psa3g3284 89 Gene3D - 13 88 IPR036638 GO:0046983
Psa3g3284 89 Coils Coil 38 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3284 Psa-Chr3 278000795 278002359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3284 10 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 54.545 2.82e-18 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g3284 HLH 0.00015 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3284 - - gmx:100790746 90.5077