Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3283 ATGAAAGAAAAGCAGTTAATGGCAGTTAGAGCGGTGATGAAGAACAAAAAACAGAGAGAAAAAAACGTGAAGCTGAAAGCAACAATGGAGTTACGGTTTGTATCACAGTTCGTCTTCAGCATTCTCGTTATTGCGCTTCTTTTTTCTCTCAATCTCACCAATGCAATCGATCATAACGAATCGAGTGTTGTTGATGGAGAAGAGAAGTTACAGATGCAGAGCTTGAAGAATTCGTCAATGGCGGAAAGTTCAAATGATGCTTTGAACGAGCATGCAGTTGATGATCCAGAGGAGCTTGCTTCCATGGTAGATACGACTATACGCAATTACACGGAGAGAAGGAATCTGAATTTTTTCTCATGTGGGACTGGAAATCCAATGGATGATTGCTGGCGCTGTGACAGGCGTTGGTCCTTCCGGCGAAAGAGGTTGGCTGATTGTGCCATTGGTTTTGGTCGCAACGCCATCGGTGGCCGTGATGGAAAGTACTATGTTGTGTCGGACCCAAAAGACGACGATCCTGTGAACCCAAAACCGGGCACTCTCCGTCATGCCGTCATTCAAGACAGGCCATTATGGATCGTGTTCAAGAGAGACATGGTGATCACTCTGAAGCAAGAACTGATCATGAACAGCTTTAAGACCATTGATGGTCGTGGTGCCAACGTTCATATTGCCTTTGGAGCCTGCATTACTATCCAGTGCAGACATGGGTATTTCCACGTGGTAAACAATGACTATACCCACTGGGAGATGTATGCCATTGGAGGTAGTGCTAATCCCACAATTAACAGTCAAGGAAACAGATACCTTGCTCCCCAGAACCCTTTTGCTAAGGAGGTGACAAAGAGGGTGGATACAGGGTCCGGCATATGGAAAGGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTAAATGGAGCCTTTTTCATTCCATCAGGAGCAGAAGCTGGAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCATCTTCTTTAGTAGGCTCCTTAACCTCAAGTGCTGGTGTTATTAGCTGTCGCAGGGGTGGCGTGTGTTAA 1062 0.4614 MKEKQLMAVRAVMKNKKQREKNVKLKATMELRFVSQFVFSILVIALLFSLNLTNAIDHNESSVVDGEEKLQMQSLKNSSMAESSNDALNEHAVDDPEELASMVDTTIRNYTERRNLNFFSCGTGNPMDDCWRCDRRWSFRRKRLADCAIGFGRNAIGGRDGKYYVVSDPKDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPQNPFAKEVTKRVDTGSGIWKGWNWRSEGDLLLNGAFFIPSGAEAGASYARASSLGAKSSSLVGSLTSSAGVISCRRGGVC* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3283 353 PANTHER PECTATE LYASE 234 350 - -
Psa3g3283 353 PANTHER PECTATE LYASE 43 234 - -
Psa3g3283 353 SUPERFAMILY Pectin lyase-like 234 346 IPR011050 -
Psa3g3283 353 SUPERFAMILY Pectin lyase-like 125 233 IPR011050 -
Psa3g3283 353 PANTHER PECTATE LYASE 18-RELATED 43 234 IPR045032 GO:0030570
Psa3g3283 353 PANTHER PECTATE LYASE 18-RELATED 234 350 IPR045032 GO:0030570
Psa3g3283 353 Gene3D - 235 346 IPR012334 -
Psa3g3283 353 Gene3D - 124 234 IPR012334 -
Psa3g3283 353 PRINTS Pollen allergen Amb family signature 147 164 IPR018082 -
Psa3g3283 353 PRINTS Pollen allergen Amb family signature 171 196 IPR018082 -
Psa3g3283 353 PRINTS Pollen allergen Amb family signature 207 223 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3283 Psa-Chr3 277763720 277769067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3283 234 353 Polysaccharide Lyase AT5G48900 75.833 9.50e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3283 K01728 - gmx:100809277 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3283 3 277763720 277769067 Psa3g3283 3 277763720 277769067 ECH