Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3276 ATGCGAACAAAAATGGCGGAAACCAAGGGTTTCACTATTCTTCACAACCTCATCGACATTGCTAACGAAATCTCTCGAATCTCCACCTTCAATTCCCTTATCAAAACTCAATGCTTAGATCTCAGCCGTAGGATCACTTTCCTCATTCCTCTCTTTCAACACCTCGTTAACGACGTCGTTTTTGTGCCCTACGAAACTCTTGTTTCGCTCCAAGAAGCTTTTCTCTCCGCTAAGAGCTTGCTTCGATTTTGTTCTTACTCAAGCCAGCTCTACATGATATTGGAGAGGGAGAAAATTAAGTGCAGATTCACTGATCTGGCTTCTCGTTTTGAACAAGCTATAAACGAGATTTCGTATGACAAACTTGATATTTCTGAGGAGCTGAAGGAGCAGATCACACTTGTGGCTGCCCAGTTTCGAAGGGCCAAAGAGCATTTTGTTCCACCTGGTCAGGAGCTTTATGAGCACCTGTTGTCTATCTATAACCAGAGCTGTGATGTGACTACTGAATCTGATGCACTGCGTTTAATATGTGAAAAACTACAGTTTGTGACTGCCGAAGATATCAAACAAGAGTCACTGGCTCTTCATAAGGTGATTGTTGATAGGGGTGGTTATTATGAGAAAAGCTTGCAGGGATTGGCAGCGGTGCTGAGAAAAATTGAAGATTTTTTGCTGAAGGACTCTGAAAATAAGGGAGATGGTTGGTTTGAGAAGCACACACAGGTGTTGTCGAGTGGGGATTTGCCTCTTCACACTAGTGAGCAATGTGTGAACTTATGTTGTCAGTCACCAGTTGTGCCGGAAGAGTTTCGCTGCCCAATATCTCTTGAGCTAATGAAAGATCCTGTCATCATTTCCACCGGACAGACATATGAACGAGCTTGCATTAGGAAATGGCTTGATACGGGGCATCGAACATGTCCCAGCACTCGGCAGATTGTTTCCAGCCCCATTCTCATACCTAATCATGTTTTATACAACCTGATATCAAATTGGTGCGAGTCAAATGGAGTTGAACAACCTAAAAGGTTAGAAAGTTTACGGCTTTGCAAGGAAACATCAGATGGCACCTCTGAATTAATAGACCTTGATTCCTTAATGAGGAAGCTTATTTCCAGATACATTGAGGATCAGCGTTGTGCAGCAGGGGAGCTCCGTCTTCTTGCCAAGCACAACAGTGAAAATCGAAAGTTGATTGCTGAAGCTGGTGCTATACCCCTCCTTGCCGATCTTCTCTATACTCCTGATGCTGGTACCCAGGAGCACACGGTTACTGCTCTTCTCAATCTATCAATCTATGAGGAAAACAAAGCGCGCATCATGGCTTCTGATGCTGTGCCGGGAATCCTTCACGTGCTAAAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAACCTCTCTTCAGCAGATGAGAACAAAGTGACAATTGGTGCATCTGGAGCAATCCAGGCTCTAGTTACTCTCTTCTGCGAAGGAAGTCAAAGAGGAAAGATTGATGCTGCGTCAGCTCTATTCAAACTGTGTATATACCAAGGTAACAAAGGACTTGCTGTTAAGGCTGGTATTGTACCCAAGTTGATAGAAATGTTAACAGAACCAGGTGGGGAGATGAGGGGCGAGGCATTGGCAATACTGGCTGTAATAGCTAGCCACCCGGACGGAAAAGCGGCAATTGGATCTATGAATGCTATTCCTATTTTGGTGGAATTAATCAGTGATGGATCTTATAGGAACAAAGAAAATGCGACTTCGGTGCTTGTATACATCTGTAAAGGAGATCCACTACACCTACCGATTGTCGCTTCACTTAAAGTGATCAATCCTCTCATGGAACTGGCAAAAAATGGTACAGAAAGGGGCAAGCGGAAAGCGGAACAGCTTCTCGAGCTTCTCGAGCTGTTACGCATTTAG 1929 0.4422 MRTKMAETKGFTILHNLIDIANEISRISTFNSLIKTQCLDLSRRITFLIPLFQHLVNDVVFVPYETLVSLQEAFLSAKSLLRFCSYSSQLYMILEREKIKCRFTDLASRFEQAINEISYDKLDISEELKEQITLVAAQFRRAKEHFVPPGQELYEHLLSIYNQSCDVTTESDALRLICEKLQFVTAEDIKQESLALHKVIVDRGGYYEKSLQGLAAVLRKIEDFLLKDSENKGDGWFEKHTQVLSSGDLPLHTSEQCVNLCCQSPVVPEEFRCPISLELMKDPVIISTGQTYERACIRKWLDTGHRTCPSTRQIVSSPILIPNHVLYNLISNWCESNGVEQPKRLESLRLCKETSDGTSELIDLDSLMRKLISRYIEDQRCAAGELRLLAKHNSENRKLIAEAGAIPLLADLLYTPDAGTQEHTVTALLNLSIYEENKARIMASDAVPGILHVLKNGSMEARENAAATFFNLSSADENKVTIGASGAIQALVTLFCEGSQRGKIDAASALFKLCIYQGNKGLAVKAGIVPKLIEMLTEPGGEMRGEALAILAVIASHPDGKAAIGSMNAIPILVELISDGSYRNKENATSVLVYICKGDPLHLPIVASLKVINPLMELAKNGTERGKRKAEQLLELLELLRI* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3276 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 340 IPR013083 -
Psa3g3276 642 Gene3D - 341 507 IPR011989 -
Psa3g3276 642 SUPERFAMILY ARM repeat 353 635 IPR016024 -
Psa3g3276 642 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 404 446 IPR000225 GO:0005515
Psa3g3276 642 SUPERFAMILY RING/U-box 267 343 - -
Psa3g3276 642 CDD RING-Ubox_PUB 271 313 IPR045210 -
Psa3g3276 642 Pfam U-box domain 267 337 IPR003613 GO:0004842|GO:0016567
Psa3g3276 642 Pfam Armadillo/beta-catenin-like repeat 393 432 IPR000225 GO:0005515
Psa3g3276 642 Pfam Armadillo/beta-catenin-like repeat 558 596 IPR000225 GO:0005515
Psa3g3276 642 ProSiteProfiles U-box domain profile. 266 340 IPR003613 GO:0004842|GO:0016567
Psa3g3276 642 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 637 - -
Psa3g3276 642 Gene3D - 9 120 IPR036537 GO:0007166
Psa3g3276 642 Gene3D - 508 640 IPR011989 -
Psa3g3276 642 SMART Ubox_2 270 333 IPR003613 GO:0004842|GO:0016567
Psa3g3276 642 Coils Coil 630 642 - -
Psa3g3276 642 PANTHER U BOX DOMAIN-CONTAINING 11 637 - -
Psa3g3276 642 SMART arm_5 434 474 IPR000225 GO:0005515
Psa3g3276 642 SMART arm_5 475 515 IPR000225 GO:0005515
Psa3g3276 642 SMART arm_5 557 597 IPR000225 GO:0005515
Psa3g3276 642 SMART arm_5 516 556 IPR000225 GO:0005515
Psa3g3276 642 SMART arm_5 393 433 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3276 Psa-Chr3 277398594 277405298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3276 15 640 U-box Gene Family AT3G46510 50.000 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3276 - - var:108326899 765.377