Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3259 ATGAACTCACAATCTTACTTCTTCAACCTTCTTCTCCTCTTCACACTTCTTCTCCCACTTTCCCACTCTTCAACCAATGAACTCACCACCTTACTTTCATGGACACAAACCCTCAAAAAACTCCCTACACCCCTAGACACAAATCCATGCAAATGGTCATTCATAACATGCTCTTCACAAAACCTTGTAACAGAAATCATCATCCAAAATGTCCAATTAGCCCTTCCTTTTCCTCCAAACATCTCTTCATTTTCCAACCTTCAAAAGTTAGTTATTTCAGGAACAAACCTGACTGGAACTATTCCAACTGAAATTGGTAACTGTTTTAACCTAATCACCATTGATCTTAGCTCAAATAGTCTTGTTGGTGAAATTCCTTCAACGATTGGAAACCTAAAAAATCTTCAAAACTTGATTCTTAACTCTAACCAATTAACTGGTTCTATACCAATTCAGATTGGTGATTGTGTTAATCTCAAAACCCTAGATATTTTCGATAACAACCTTACCGGAAACCTTCCAAATGAACTAGGAAATCTTACAAATCTTGAGGTTATAAGAGCTGGTGGAAACAAAGATATTATAGGGAAGATTCCAGAAGAATTAGGTGAATGCAAGAATTTGACTGTTCTAGGGCTTGCAGACACTAAGATTTCTGGTTCAATACCTAGTTCATTAGGTAAATTAACCATGCTTCAAACTATATCTATTTATAGTACTTTGATTTCTGGTGAAATTCCTCGCGAAATCGGTAACTGTTCGGAGCTTGTGAACTTGTTTTTGTATGAGAATGATCTTTCTGGTGAGATTCCTTTTGAAATAGGTAAGCTTGTGAAGCTGGAAAAGATTTTGTTATGGCAAAATGGTTTTGTTGGTGGCATACCTGAGGAGATTGGAAACTGTAGTAGTTTGAAGATTCTTGATTTGTCTCTGAATTTTCTCTCTGGTGGAATGCCGAAGAGTTTAGGGAAGTTGTTGAATCTTGAAGAGCTTATGTTGAGTAATAATAACATTTCTGGTTCGATACCGGGTTCGATTTCGAATCTTACAAATTTGATTCAGTTGCAGTTGGATACAAATGAGATATCGGGTTTGATTCCGAGTGAGATTGGTAAGTTGACGAAGCTAACTGTTTTTTTCGCTTGGCAGAATAGACTTGAAGGTAGAATTCCGTCGGAGTTAGGAGATTGTTCAAGCCTCGAGGCTTTGGATTTGTCTTACAATGAACTTGGTAATAGTTTACCTTCAAATCTTTTTAAGCTTCAAAATTTAACCAAGCTTTTATTGATTTCTAATGATATCTCTGGCTCTATTCCTCCTGAGATTGGTAATTGTAGCTCTCTCATTCGACTCCGGCTCGTAGATAACAGAATCAACGGTGAGATACCGAGAGAGATAGGTTTTCTTAATAACCTTAGTTTCCTTGATTTGTCTGAAAATCGTCTTAGTGGTTCGGTACCGTTAGAGATTGGAAACTGTAAAGAACTTCAAATGTTGAATCTAAGTAATAACTCTCTTTCTGGTGATCTGCATAGTTTGTCTTCTCTTACAATGCTAGAGGTTTTGGACGTGTCGATGAATAATTTTTCTGGCGAGGTTCCGATTAGTATTGGTCAATTAACTTCACTTCTAAGAGTTATTTTAAGCAAAAACTCTTTCTCTGGATCAATTCCTTCATCACTTGGGAAATGTTCCGGGATTCAACTTCTTGACCTTAGCAGCAATGTGTTCTCGGGGAGTATACCGCGAGAATTGTTTCAAATTGAAGCACTTGATATTGCTTTGAATTTGAGTCACAATGCTTTATCAGGAATGATCCCGGTTGAGATATCGGCTCTTGACAAGTTGTCTGTTTTAGACATTTCGCATAACAATCTTGAAGGTGACTTGATGGTGTTTTCAAGCCTTGAAAATCTTGTTTCTTTGAACATTTCGTATAACAAATTCGCTGGTTATTTACCAGACAGCAAGTTGTTTCATCAACTAGCAGCAACAGATTTGGATGGAAATCAAGGTTTGTGTCCTAATGGACATGATACATGTTTCGTTGGGAGTTCTGCAATGACAAAGATGTTAAATGGCTCTAATTCTAAGAGGTCAGAGATGATTAAAGTTGCGATTGGATTGCTCAGTTCTTTGGCAGTTGCAATGGCAATATTTGGAGTTGTTACCGTCTTTCGAGCAAGGAAAATGGTTCGAGACGACAATGATTCCGAGATGGGAGGAGGAGGAGGAGGTGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAGGTAAACTTTCGTGTGGAGCAGATTCTAAAATGTTTAGTGGAATCCAATGTAATTGGAAAGGGATGTTCAGGGATCGTTTATCGCGCGGAAATGGAAAACGGCGATGTCATTGCTGTCAAAAGACTATGGCCAACAACAACAGCTGCCACTGCTGCTGCAAGATATGATAGTGACAAGTTAGCTGTTAATGGAGGAATTCGCGATTCGTTTTCTGCCGAGGTTAAAACTCTCGGTTCGATTCGCCACAAGAACATCGTGAGGTTCTTAGGTTGCTGTTGGAACAGAAACACAAGATTGCTTATGTATGATTACATGCCAAATGGGAGTCTTGGAGGCTTACTTCATGAAAGAAGTGGTAATTGCTTGGAGTGGCACATTAGATTCAAGATAATACTAGGAGCAGCTCAAGGTTTGGCTTATTTACACCATGATTGCGCTCCTCCTATTGTTCACAGAGACATTAAGGCCAACAACATTCTCATAGGACTTGAATTCGAACCTTACATAGCCGATTTTGGACTTGCAAAACTCGTTGATGATGGAGATTTCGCAAGATCTTCTAGTACACTTGCCGGTTCTTATGGTTACATAGCTCCTGAGTACGGATACATGATGAAGATAACCGAGAAAAGTGATGTATACAGCTACGGCATAGTTGTATTAGAAGTACTAACAGGTAAGCAACCGATCGATCCAACAATACCAGACGGACTTCACATCGTCGATTGGGTTAGACAGAAAAGAGGGCGAGTTGAAGTGCTAGACGAAAGCTTAACAACGAGGCCAGAATCTGAAATAGAAGAAATGTTGCAAACTCTAGGTGTTGCTTTGTTATGCGTAACCTCGAGTCCAGACGACAGACCGACGATGAAAGACGTGGTGGCGATGATGAAAGAGATTAAACAAGAGAGAGATGAATGTGTGAAAGTTTTTGATCAACATGAGAGGAATCATTCTAATGAAGAGTCAGTTGAAGGGATGAAACATTCATGTCCAGCAACAAGTAGCAGCAACATGAATATGCATTTACATTATTCTCCTCATATTTCTACAACACTAGATTAA 3339 0.3899 MNSQSYFFNLLLLFTLLLPLSHSSTNELTTLLSWTQTLKKLPTPLDTNPCKWSFITCSSQNLVTEIIIQNVQLALPFPPNISSFSNLQKLVISGTNLTGTIPTEIGNCFNLITIDLSSNSLVGEIPSTIGNLKNLQNLILNSNQLTGSIPIQIGDCVNLKTLDIFDNNLTGNLPNELGNLTNLEVIRAGGNKDIIGKIPEELGECKNLTVLGLADTKISGSIPSSLGKLTMLQTISIYSTLISGEIPREIGNCSELVNLFLYENDLSGEIPFEIGKLVKLEKILLWQNGFVGGIPEEIGNCSSLKILDLSLNFLSGGMPKSLGKLLNLEELMLSNNNISGSIPGSISNLTNLIQLQLDTNEISGLIPSEIGKLTKLTVFFAWQNRLEGRIPSELGDCSSLEALDLSYNELGNSLPSNLFKLQNLTKLLLISNDISGSIPPEIGNCSSLIRLRLVDNRINGEIPREIGFLNNLSFLDLSENRLSGSVPLEIGNCKELQMLNLSNNSLSGDLHSLSSLTMLEVLDVSMNNFSGEVPISIGQLTSLLRVILSKNSFSGSIPSSLGKCSGIQLLDLSSNVFSGSIPRELFQIEALDIALNLSHNALSGMIPVEISALDKLSVLDISHNNLEGDLMVFSSLENLVSLNISYNKFAGYLPDSKLFHQLAATDLDGNQGLCPNGHDTCFVGSSAMTKMLNGSNSKRSEMIKVAIGLLSSLAVAMAIFGVVTVFRARKMVRDDNDSEMGGGGGGDSWPWQFTPFQKVNFRVEQILKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTTAATAAARYDSDKLAVNGGIRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGGLLHERSGNCLEWHIRFKIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGRVEVLDESLTTRPESEIEEMLQTLGVALLCVTSSPDDRPTMKDVVAMMKEIKQERDECVKVFDQHERNHSNEESVEGMKHSCPATSSSNMNMHLHYSPHISTTLD* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3259 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 1077 - -
Psa3g3259 1112 Pfam Protein tyrosine and serine/threonine kinase 773 1053 IPR001245 GO:0004672|GO:0006468
Psa3g3259 1112 Gene3D Ribonuclease Inhibitor 190 326 IPR032675 -
Psa3g3259 1112 Gene3D Ribonuclease Inhibitor 424 683 IPR032675 -
Psa3g3259 1112 Gene3D Transferase(Phosphotransferase) domain 1 863 1083 - -
Psa3g3259 1112 Pfam Leucine Rich Repeat 158 180 IPR001611 GO:0005515
Psa3g3259 1112 Pfam Leucine Rich Repeat 327 349 IPR001611 GO:0005515
Psa3g3259 1112 SUPERFAMILY L domain-like 42 291 - -
Psa3g3259 1112 Coils Coil 1055 1075 - -
Psa3g3259 1112 ProSiteProfiles Leucine-rich repeat profile. 327 349 IPR001611 GO:0005515
Psa3g3259 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672|GO:0006468
Psa3g3259 1112 SUPERFAMILY RNI-like 237 588 - -
Psa3g3259 1112 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 8 1077 - -
Psa3g3259 1112 Gene3D Ribonuclease Inhibitor 327 423 IPR032675 -
Psa3g3259 1112 Gene3D Phosphorylase Kinase; domain 1 754 862 - -
Psa3g3259 1112 SUPERFAMILY L domain-like 595 675 - -
Psa3g3259 1112 ProSiteProfiles Protein kinase domain profile. 770 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g3259 1112 ProSiteProfiles Leucine-rich repeat profile. 495 517 IPR001611 GO:0005515
Psa3g3259 1112 SUPERFAMILY Protein kinase-like (PK-like) 751 1055 IPR011009 -
Psa3g3259 1112 SMART serkin_6 770 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g3259 1112 SMART LRR_typ_2 325 348 IPR003591 -
Psa3g3259 1112 SMART LRR_typ_2 349 373 IPR003591 -
Psa3g3259 1112 SMART LRR_typ_2 132 156 IPR003591 -
Psa3g3259 1112 SMART LRR_typ_2 469 493 IPR003591 -
Psa3g3259 1112 SMART LRR_typ_2 397 421 IPR003591 -
Psa3g3259 1112 SMART LRR_typ_2 516 540 IPR003591 -
Psa3g3259 1112 SMART LRR_typ_2 636 661 IPR003591 -
Psa3g3259 1112 Gene3D Ribonuclease Inhibitor 15 176 IPR032675 -
Psa3g3259 1112 PRINTS Leucine-rich repeat signature 472 485 - -
Psa3g3259 1112 PRINTS Leucine-rich repeat signature 613 626 - -
Psa3g3259 1112 ProSitePatterns Protein kinases ATP-binding region signature. 776 798 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3259 Psa-Chr3 276141372 276145452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3259 30 1060 Receptor kinase-like Gene Family AT5G56040 46.914 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa3g3259 PK_Tyr_Ser-Thr 3.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3259 - - gmx:100794698 1681