Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3257 ATGGAGTGTGTTTTAGATCTGCATGCAAAGATGGTGAATGAAAGAGAAGAAGACGGTTTTGGAAGTTTAGGAGAAGATGAAAAATTAGTGGCGGTTTCTGAGAGAGAGATTTGGCTTGATGATGCTACAAATCATCAAGATGATGATGATCTTTTAGGTATGAATATGAATGATGATGCATCTGTGTTCTATGCTGATTTTCCGTCTTTACCTGATTTTCCATGCATGTCATCAGCATCATGTTCATCATCATCATCAGCATCATCATCTTCATGTTCAACACCATTGAAAACCATTGCATGTACTACTTCAACTACTACTACAACTGCAACATCTTCTTCCTCTTCTGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGTTGAAGAAGATCATCATCACGGTGAGAAAATGAAGAGTTGTGATAATAATCATGGGTTTTTGAACATGCATGATCCATTAGATCATCATCATCATCATGGTCAACATGCAACAACCGCGTCTATAGAGATTCCTCAACAACAACAAGAGCTTGGTGTTGGTGATTGCATGGAGGATGTTATGATGGATGATACTTTTGGTTACATGGAGCTTTTAGAAGCTAATGACTTTTTTGACCCTGCTTCGATTTTTCAAACCGAAGGAGAAACCCCTTTAGTTGATGATTTCACACAAGAACAAGAACAAGTTCTAGTGCAACATCAACAAGTTCCCATAGTGGTGCATGATGATAGTGAAACGAAACTAGACCTCAATTTTGATGGTGTTGGTGTTAATGATGGTGCATGTGATGGTGTTAATGATGAGATGAGTAATGTTTTTTTGGAATGGCTTAAATCTAACAAAGATAGTGTATCAGCTAATGATTTGAGGAATGTGAAGCTTAAGAAATCAACAATTGAAAGCGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAATTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAACAAAAGGCTCAAAGAAAACAACAATAACACAACAACCTCAAATGTTGTTCCTCAACAACCACTGCCGCAGTTTCAAGATCTATGTCCGAACCAAAACACGACAAACACATGTTTTAACCAAACTTCATGGATGGATCAAACGCAAACACCTCTTGTTGTTCCTCCACAACAATTTTCGCAAGGGATGGTTGGAGTTGGATACGTCGGCGATATCCATTACACAAATGGTTCGGTTTCGAATAGCCTTTACCAACAAGGCTCTACTAATGAGTATCATCAATTCAATGTTGTTCCAAACTACAATCAACCATCGTTTGTGGATAGCAACAACAATGTTGTACAACCTCATGGTTTGAGTTTTGGAGGATATGGAAATCAATATGGTTCTTATCAGTTTTTTCATGGAGGTGGTGGTGATCGGTTAATGAGGTTAGGTCCTTCGGCTACAAAAGAAGCTCGGAAGAAGAGAATGGCGAGACAAAGAAGGTTTGTTTCTCATCATAGGAATCATCATCAAGGTTCTGAATCAGTTGCTAGATTGGGTGGTGGTGGTGGTGGTGATAATTGCACCAATGGCGTGGGTGTTGGTTCTCATGCAAATCAAGCTAACTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCAGCTTCCTTGGCACCTGTTGTTCGGGATGAGCAGACGCAGCCTCCGGTGGAACGAGATCGCACCAACAATCAGACACAGAATTCTCATCAAGGTCGAAATGCATCGGATAAGAAACAGGGTTGGAAGCCAGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCCGAACTCGAGGCGAGAGACGGAATTTCCATTACAATGGAAGATATCGGAACTTCTCGAGTTTGGAATATGCGCTATAGATATTGGCCAAATAACAAAAGCAGAATGTATTTGCTTGAAAACACCGGTGACTTTGTGAAAGCTAATGGACTCCAAGAGGGTGATTTCATTGTGTTGTATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAGCAAAACCAGAGGCGAAGAAAACAGGAAAAGCACAGAAAAACCAGCAGCAGCAGCAGCATGGGAATAATAATAGTAATACAGCTGGAAATGATGCGGTGGATAATAATGACACACCATCTTCACCAAAAAGGAAGAAATGA 2262 0.4019 MECVLDLHAKMVNEREEDGFGSLGEDEKLVAVSEREIWLDDATNHQDDDDLLGMNMNDDASVFYADFPSLPDFPCMSSASCSSSSSASSSSCSTPLKTIACTTSTTTTTATSSSSSASSSSAASWAVLKSEVEEDHHHGEKMKSCDNNHGFLNMHDPLDHHHHHGQHATTASIEIPQQQQELGVGDCMEDVMMDDTFGYMELLEANDFFDPASIFQTEGETPLVDDFTQEQEQVLVQHQQVPIVVHDDSETKLDLNFDGVGVNDGACDGVNDEMSNVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQNKRLKENNNNTTTSNVVPQQPLPQFQDLCPNQNTTNTCFNQTSWMDQTQTPLVVPPQQFSQGMVGVGYVGDIHYTNGSVSNSLYQQGSTNEYHQFNVVPNYNQPSFVDSNNNVVQPHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVSHHRNHHQGSESVARLGGGGGGDNCTNGVGVGSHANQANWMYWQSMAGGKAASLAPVVRDEQTQPPVERDRTNNQTQNSHQGRNASDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQQQQHGNNNSNTAGNDAVDNNDTPSSPKRKK* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3257 753 ProSiteProfiles B3 DNA-binding domain profile. 602 704 IPR003340 GO:0003677
Psa3g3257 753 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 34 741 - -
Psa3g3257 753 MobiDBLite consensus disorder prediction 717 744 - -
Psa3g3257 753 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 34 741 IPR044800 GO:0003700
Psa3g3257 753 MobiDBLite consensus disorder prediction 500 520 - -
Psa3g3257 753 Gene3D - 598 718 IPR015300 -
Psa3g3257 753 Pfam B3 DNA binding domain 603 699 IPR003340 GO:0003677
Psa3g3257 753 SMART B3_2 602 702 IPR003340 GO:0003677
Psa3g3257 753 CDD BfiI_C_EcoRII_N_B3 600 701 - -
Psa3g3257 753 SUPERFAMILY DNA-binding pseudobarrel domain 601 697 IPR015300 -
Psa3g3257 753 MobiDBLite consensus disorder prediction 704 753 - -
Psa3g3257 753 MobiDBLite consensus disorder prediction 128 148 - -
Psa3g3257 753 MobiDBLite consensus disorder prediction 553 593 - -
Psa3g3257 753 MobiDBLite consensus disorder prediction 129 145 - -
Psa3g3257 753 MobiDBLite consensus disorder prediction 568 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3257 Psa-Chr3 276108598 276112651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3257 35 740 B3 DNA Binding Superfamily AT3G24650 44.385 1.39e-162 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa3g3257 B3 8.3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3257 - - gmx:100795226 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3257 3 276108598 276112651 Psa3g3257 3 276108598 276112651 ECH