Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3239 ATGAGTTCCGTCCAAGTTCTATCCACCACAACAATTCATGCACAAAATCACAATCTCAATGGCTCAAATGATCGTACAATCGATCTATCCCCATGGGATCTACAATTCCTCCCATTTGGATATAATCAAATAAGTTTTGTTTATCGTCATTCAAACAAATCAGATATATTTAACCAAATCCAGCACCTTAAACAATCCTTTTCCTCTGCCCTTGATTTTTTCCACATCTTCGCAGGTCGTCTCAAAATCACACAACACGGAGATAACACTATCTCTTGTTCTATCAAATGTAATAACAAAGGTGCACTATTTGTTCATGCCGCAGCAAAATATATTACTGTGAATGATATTCTTGAACCCACTCATCTTCCTTATGTTCATCACTCACTTTTCTTAATGAACGGAATAAAAAACTACCAAGGGACATCACATCCATTACTCGCAGTTCAAGTAACAGAGCTAGATGATGGAATATTTATCGGGATTACATCAAGCCATGTGGTTGGTGATGCTAATTTGTTTTCCAATTTTAACAATTTGTGGGCAAAAATCTCAAGAGGGTCTTTTGAAGTGTCCAAAACTCCAATATTTGAACGTTGGTTTCCTAAAGGTATTGAATGCCCCATTCGATTTCCTCTCACAATAGAGGCACAAAGTAATCTTAAAGAAAAAAAACTAAACCCACCAGAGAGAATATTTCATTTCACAAAAGAAAATATTGCAAAACTAAAATTTAAAGCCAACTTTGAGGCCGGTAAAAAAAATATATCTTCTTTGCAAGCAGTTTTAACTCACATTTGGCGTTCTTTTACACGTTCTAAAAAAATTGACTACGAAACTGATGTGAGTTTTTCGATTGATATAAATGTCAGACAAAGACTGGATCCTCCTTTGCATGAAGATTATTTTGGTAATGCTGTAATAGAATGTTTGGTTACAATGAAAGCTGGTGAATTGTTGGACGATGGTGGACTTGGCAAAGGTGCATTGAAGATGAATAAGATGATTGCTTCGCACACTGATGAGATGATAAGAAGTCACTATGAAAAGTGGTTAATAAAACCGATTTTTTATGTTACACCTAAAGATGTGTCCCAAAATAAGGGTTTGGTGATTGCTTATTCACCTAGGTATGATGTATATGGTAATGATTTTGGTTGGGGGAAACCTGTGGGAGTTCGAACCGGTGGTGCAGATAAACGAGAAGGAAAAATTAATGTGTTTGCAGGTGTAGAAGAAGGTAGTATGGTACTTGAAGTGTGTCTTTCTTATGATATTTTAGAAGCAATGGAAAATGATCTAGAGTTTATGGATGTTGTCTCACCCTAA 1329 0.3589 MSSVQVLSTTTIHAQNHNLNGSNDRTIDLSPWDLQFLPFGYNQISFVYRHSNKSDIFNQIQHLKQSFSSALDFFHIFAGRLKITQHGDNTISCSIKCNNKGALFVHAAAKYITVNDILEPTHLPYVHHSLFLMNGIKNYQGTSHPLLAVQVTELDDGIFIGITSSHVVGDANLFSNFNNLWAKISRGSFEVSKTPIFERWFPKGIECPIRFPLTIEAQSNLKEKKLNPPERIFHFTKENIAKLKFKANFEAGKKNISSLQAVLTHIWRSFTRSKKIDYETDVSFSIDINVRQRLDPPLHEDYFGNAVIECLVTMKAGELLDDGGLGKGALKMNKMIASHTDEMIRSHYEKWLIKPIFYVTPKDVSQNKGLVIAYSPRYDVYGNDFGWGKPVGVRTGGADKREGKINVFAGVEEGSMVLEVCLSYDILEAMENDLEFMDVVSP* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3239 442 Pfam Transferase family 3 437 - -
Psa3g3239 442 PANTHER ANTHRANILATE N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE-LIKE PROTEIN 3 439 - -
Psa3g3239 442 Gene3D - 229 437 IPR023213 -
Psa3g3239 442 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 3 439 - -
Psa3g3239 442 Gene3D - 2 208 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3239 Psa-Chr3 274593533 274595182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3239 46 434 Monolignol Biosynthesis Gene Families AT5G48930 26.225 5.86e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3239 - - gmx:100500257 431.409