Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3219 ATGGCTGAGGTGAAATCAGAGGAGTATTGTTTGGAGAATAAGCAATCAACTGTTGCTTCTTGCTCCTCTGTGTCTGAAGGTAGTGGCAGTGTGGTTCATAAGTCTCCTGGGATATGTAGCCCGCCGTCGCCCTCGCATCGGAGGACAACCGGTCCTATAAGGCGTGCCAAGGGTGGTTGGACAGCAGAGGAGGATGAGACATTAAGGAATGCTGTTGCAGCTTTTAATGGAAAGCATTGGAAGAAAATAGCCGAGTTTTTTCCTGATAGATCAGAAGTTCAATGTCTGCACAGATGGCAAAAGGTTCTTAATCCAGATCTTGTTAAAGGACCGTGGACACAGGAGGAGGATGATAAAATAGTTGAACTGGTGTCAAAATATGGGCCTACAAAATGGTCCTTGATTGCCAAGTCTTTGCCTGGTCGAATAGGGAAACAGTGTCGAGAGAGGTGGCACAATCATCTTAATCCTGGAATAAAGAAGGATGCTTGGACTTTGGAAGAGGAACTAGCCTTGATGAATGCTCATCATATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAGAACCATTGGAATAGTTCTTTGAAGAAGAAGTTGGACTTTTACTTAGCCACAGGAAAACTTCCACCAATTCCAAAAAACAATTCATTATTTGCTGCCAAAGAAACACTTAGACGCTCTACTACTAAAATAATACCTGTTTCATCTAATGTAGAATTAAGTGTAGCGGTCGAAACATCCTCTGAAACTACAGCCATTAGTAAGCATGATGACAGTGGCAAGAATCAGTTTGAGTCCTCAGGAACAGCTAGAGAAGTTGGTGATTCTTCAAGTGTCCCAGGAAATGAATCTGCTGATTCTGACTGTGTAGAATGCAAGCCTGGACCATCCAATGTTGACCTTAGCTGTGGAAACTCTGAACATATCTCAAGAGCTAATTTTGGAACAACTTATGGGCCAAATAATGAGAATTCCGCACTCAATGGAAACTTAATAACTCGGCATTGTTTAAGCAATGGTAAAATGGGCAATAGCAGTAGCAAGTTAATCAGGACATCCACTCAAGAAAATCAGAATTTTGGTTCTTTGTGTTACGAACCACCAGTTTTAGCTGGTTCAGTTCCTTTAGATTCTCTTCATTTAAGTATCCTCTGCATGCAGAATGATTACAGTTCTAAGTTGCCACCCATGGGTTTCATCACTCCACCTCGTGCGAGTGTTAGTGAATTATGTACGGAGACCCCTGAATCAATATTGAGAAAGGCTGCCGATACTTATCCAAATACTCCTTCCATATATAGGCGGAGAAGAACTGGAGTCCAACTACTCACTTCTCCTAGTAAAGTGTTAAAAGTCAATATTGATTCACATGCTTCTAATGAACCAGATAGAACAAAAAACAATTCTGGTTCTGAAGCTCGGGTGTTGTCCAAGAGTCCCGCAAGCCGTGACAATAAGAGTGTTATTCTTGATAATAAGGCATTCAATGCATCTCCACCGTACCGATTAAGAACCAAACGAACAGCAATTGTCAAATCTGTGGAGAAGCAACTTGAGTTTGCGTTTGATAAAGAGAAGAATGATGATTGTCTGCATGAAAGAAAATTGGTAGTGACATAG 1653 0.4144 MAEVKSEEYCLENKQSTVASCSSVSEGSGSVVHKSPGICSPPSPSHRRTTGPIRRAKGGWTAEEDETLRNAVAAFNGKHWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPGIKKDAWTLEEELALMNAHHIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGKLPPIPKNNSLFAAKETLRRSTTKIIPVSSNVELSVAVETSSETTAISKHDDSGKNQFESSGTAREVGDSSSVPGNESADSDCVECKPGPSNVDLSCGNSEHISRANFGTTYGPNNENSALNGNLITRHCLSNGKMGNSSSKLIRTSTQENQNFGSLCYEPPVLAGSVPLDSLHLSILCMQNDYSSKLPPMGFITPPRASVSELCTETPESILRKAADTYPNTPSIYRRRRTGVQLLTSPSKVLKVNIDSHASNEPDRTKNNSGSEARVLSKSPASRDNKSVILDNKAFNASPPYRLRTKRTAIVKSVEKQLEFAFDKEKNDDCLHERKLVVT* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3219 550 Gene3D - 162 226 - -
Psa3g3219 550 ProSiteProfiles Myb-like domain profile. 104 155 IPR001005 -
Psa3g3219 550 Pfam Myb-like DNA-binding domain 109 155 IPR001005 -
Psa3g3219 550 Pfam Myb-like DNA-binding domain 161 204 IPR001005 -
Psa3g3219 550 Pfam Myb-like DNA-binding domain 57 103 IPR001005 -
Psa3g3219 550 SUPERFAMILY Homeodomain-like 58 113 IPR009057 -
Psa3g3219 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 159 IPR017930 -
Psa3g3219 550 MobiDBLite consensus disorder prediction 467 494 - -
Psa3g3219 550 CDD SANT 60 103 IPR001005 -
Psa3g3219 550 ProSiteProfiles Myb-like domain profile. 52 103 IPR001005 -
Psa3g3219 550 MobiDBLite consensus disorder prediction 274 295 - -
Psa3g3219 550 CDD SANT 163 206 IPR001005 -
Psa3g3219 550 Gene3D - 56 108 - -
Psa3g3219 550 Gene3D - 109 160 - -
Psa3g3219 550 MobiDBLite consensus disorder prediction 259 302 - -
Psa3g3219 550 SUPERFAMILY Homeodomain-like 106 202 IPR009057 -
Psa3g3219 550 PANTHER MYB-RELATED PROTEIN B-LIKE 373 478 - -
Psa3g3219 550 PANTHER MYB-RELATED PROTEIN B-LIKE 20 302 - -
Psa3g3219 550 PANTHER MYB PROTEIN-RELATED 20 302 - -
Psa3g3219 550 PANTHER MYB PROTEIN-RELATED 373 478 - -
Psa3g3219 550 MobiDBLite consensus disorder prediction 474 494 - -
Psa3g3219 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 210 IPR017930 -
Psa3g3219 550 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Psa3g3219 550 CDD SANT 111 155 IPR001005 -
Psa3g3219 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 103 IPR017930 -
Psa3g3219 550 SMART sant 160 208 IPR001005 -
Psa3g3219 550 SMART sant 108 157 IPR001005 -
Psa3g3219 550 SMART sant 56 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3219 Psa-Chr3 272717426 272726157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3219 2 540 MYB Transcription Factor Family AT3G09370 48.913 6.33e-145 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g3219 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3219 K09422 - gmx:100793280 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3219 3 272717426 272726157 Psa3g3219 3 272717426 272726157 ECH