Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3214 ATGGTAATAACAAGTTCAAAAACTACTGCACCTGCAGGTCCATTACCCTATTCCATTCCACCACTCCTTAGCCTCTCTCTCCATAAGTACCCCCTTCCACCTTCTCACTTTCCACTCATCCCCAAATCACTCACCTCTCTTTCTCTCTCTCTCTCTCTTGCAATGGCTGCAATTCTTCTCCTCACCATTGCATCACTAACCTCACTTTTTGCTCCAACCACCGCTCGAATCCCTGGAGTTTACACCGGCGGCCCTTGGACCAGTGCTCATGCTACTTTCTACGGCGGCAGTGATGCCTCCGGAACAATGGGTGGTGCTTGTGGGTACGGAAACTTATACAGCCAAGGCTACGGCGTCAACACCGCAGCACTAAGCACAGCACTATTCAACAATGGCTTAAGTTGCGGTGCATGTTTTGAGCTCAAGTGTGACCAAGATCCACGGTGGTGTAACCCTGGAAACCCTTCCATCTTAATCACTGCAACAAACTTTTGTCCTCCAAATTTCGCTGAACCTAGTGACAATGGTGGCTGGTGTAACCCACCTCGACCACACTTTGATCTTGCCATGCCCATGTTCCTTAAGATCGCTCAATACCGCGCCGGAATCGTCCCCGTTGCTTACCGCCGTGTGCCATGCAGAAAGGCAGGAGGCATCAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTTCTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGCGCGTGAGTGTAAAAGGAACCAACACAGCGTGGATGACAATGAGCCGTAACTGGGGGCAAAACTGGCAATCCAACGCAGTTTTTGTGGGCCAGGCTCTCTCTTTTAGGGTCACCGGCAGTGACCGTCGTACATCAACGTCATGGAACGTGGCACCACCTCATTGGCAGTTCGGACAAACCTTCACAGGAAAGAATTTCCGCGTCTGA 939 0.5091 MVITSSKTTAPAGPLPYSIPPLLSLSLHKYPLPPSHFPLIPKSLTSLSLSLSLAMAAILLLTIASLTSLFAPTTARIPGVYTGGPWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCDQDPRWCNPGNPSILITATNFCPPNFAEPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKAGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTNTAWMTMSRNWGQNWQSNAVFVGQALSFRVTGSDRRTSTSWNVAPPHWQFGQTFTGKNFRV* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3214 312 Pfam Expansin C-terminal domain 219 296 IPR007117 -
Psa3g3214 312 PRINTS Expansin signature 116 130 IPR002963 GO:0009664
Psa3g3214 312 PRINTS Expansin signature 143 154 IPR002963 GO:0009664
Psa3g3214 312 PRINTS Expansin signature 157 167 IPR002963 GO:0009664
Psa3g3214 312 PRINTS Expansin signature 176 193 IPR002963 GO:0009664
Psa3g3214 312 PRINTS Expansin signature 193 206 IPR002963 GO:0009664
Psa3g3214 312 PRINTS Expansin signature 217 229 IPR002963 GO:0009664
Psa3g3214 312 PRINTS Expansin signature 229 250 IPR002963 GO:0009664
Psa3g3214 312 PRINTS Expansin signature 264 285 IPR002963 GO:0009664
Psa3g3214 312 PRINTS Expansin signature 293 309 IPR002963 GO:0009664
Psa3g3214 312 PANTHER EXPANSIN 56 311 - -
Psa3g3214 312 Gene3D - 73 214 IPR036908 -
Psa3g3214 312 Pfam Lytic transglycolase 121 208 IPR009009 -
Psa3g3214 312 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 228 307 IPR007117 -
Psa3g3214 312 SUPERFAMILY Barwin-like endoglucanases 85 236 IPR036908 -
Psa3g3214 312 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 104 218 IPR007112 -
Psa3g3214 312 SMART dpbb_1 121 208 IPR007112 -
Psa3g3214 312 PANTHER EXPANSIN-A15 56 311 IPR002963 GO:0009664
Psa3g3214 312 SUPERFAMILY PHL pollen allergen 216 307 IPR036749 -
Psa3g3214 312 PRINTS Expansin/Lol pI family signature 85 100 IPR007118 GO:0005576
Psa3g3214 312 PRINTS Expansin/Lol pI family signature 103 121 IPR007118 GO:0005576
Psa3g3214 312 PRINTS Expansin/Lol pI family signature 125 143 IPR007118 GO:0005576
Psa3g3214 312 PRINTS Expansin/Lol pI family signature 201 217 IPR007118 GO:0005576
Psa3g3214 312 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Psa3g3214 312 PRINTS Expansin/Lol pI family signature 293 307 IPR007118 GO:0005576
Psa3g3214 312 Gene3D - 218 310 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3214 Psa-Chr3 272314899 272317866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3214 57 312 Expansin Gene Family AT2G39700 82.422 1.42e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3214 - - gmx:547955 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3214 3 272314899 272317866 Psa3g3214 3 272314899 272317866 ECH