Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3208 ATGTCCTTCTTCTTCTTCTATTTCTACACGATATTCTTGCTTCCTATGGTGTTGTTGCATTCCTATTTAAACTTGTTTGCTGGTAATGGAGGCTTTCCTCAAGCTTTAATTAAAGTTTCATTTAGAAACTCTAATAGCTTTTATTTTGAGCTTTACGGTGAGGAAGGATGGAATGCTTACATTGCACTAGTCGGCGGTAACATGGTTGTCTGGAAGGGTGCGCAAACTACTCCATTGATAATTACAAAGCTGATTGCTGAAGTTTTTGAGAGGAACAATTTACCCGGAGCTATCTTTACCGATGATGCCGATATCACATTGGTTGTGCGCTCTATTTTCTTTGCAGCCGTCGTAAAAAAAAAAGGATTACTCTTTTACTCCGACGAAACTTTCCTCAGGACAGTAACAGCGAACCTCACCGGCTCAAAATACAACATTTGGGATCAGAAACATTGTCCTAATTCCAAATCCAAAAGTAATCAACCAAATTCAAAGCAGCCTCTTGCTGTTGTTGAGTATGTACCTACAATACCAACATGTACAGGAACTCATAGAAGTATCAAAGCATATATACCTAATCATCAAGCTATGTCTTTCAAGAACACTTCACAGGTGCAACATAGTAAGGGTTTGCCACTCAATTGGAAAGGAAAATTGGACAAAGTTCATCAACTATACTCAAAGGATCCACTCTATAACAAGAGTACAAAGCAAATTGAGCTTGACTATAGGGATAAAGGAAGAACAGGACTTGTAATTCAGAAATCAGTTAAAAACTTTCAGTTCACTTTAGAGGAGAATGGGAAGCAGACAATTTTGCAGCTAGGGAGGGTGGCAAAATCTAAGTTTGTTATGGACTATAGATATCCTTTGACTGGTTACCAGGCTTTTTCGATATGTTTGGCTTCCCTTGATGCAAAGCTGCTGTTGCCTGCGACAAAGGTTGCAGCTATGCATAGTCTAACCTCGGTGTCTTGCTTCAACTATCCGAAGAACTACCACAAGCTTAAGAATCCAGAGGAGCATGAACGGTTATTGCGAGAAATTCCTGTAGTTATTGCAGAAAAACTAGAATCAGCATCATTAAACAAGTGCAAAGTAACTAAATCCAACCTACCTCAATAA 1125 0.3893 MSFFFFYFYTIFLLPMVLLHSYLNLFAGNGGFPQALIKVSFRNSNSFYFELYGEEGWNAYIALVGGNMVVWKGAQTTPLIITKLIAEVFERNNLPGAIFTDDADITLVVRSIFFAAVVKKKGLLFYSDETFLRTVTANLTGSKYNIWDQKHCPNSKSKSNQPNSKQPLAVVEYVPTIPTCTGTHRSIKAYIPNHQAMSFKNTSQVQHSKGLPLNWKGKLDKVHQLYSKDPLYNKSTKQIELDYRDKGRTGLVIQKSVKNFQFTLEENGKQTILQLGRVAKSKFVMDYRYPLTGYQAFSICLASLDAKLLLPATKVAAMHSLTSVSCFNYPKNYHKLKNPEEHERLLREIPVVIAEKLESASLNKCKVTKSNLPQ* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3208 374 Gene3D Tubby Protein; Chain A 115 305 IPR025659 -
Psa3g3208 374 Pfam Tub family 127 305 IPR000007 -
Psa3g3208 374 PANTHER TUBBY-LIKE PROTEIN 8 110 309 - -
Psa3g3208 374 SUPERFAMILY Tubby C-terminal domain-like 124 308 IPR025659 -
Psa3g3208 374 PRINTS Tubby superfamily signature 131 155 IPR000007 -
Psa3g3208 374 PRINTS Tubby superfamily signature 248 264 IPR000007 -
Psa3g3208 374 PRINTS Tubby superfamily signature 268 287 IPR000007 -
Psa3g3208 374 PRINTS Tubby superfamily signature 289 311 IPR000007 -
Psa3g3208 374 PANTHER TUBBY-RELATED 110 309 - -
Psa3g3208 374 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 57 99 IPR016162 GO:0016491
Psa3g3208 374 SUPERFAMILY ALDH-like 56 99 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3208 Psa-Chr3 271760491 271762590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3208 56 100 Acyl Lipid Metabolism Gene Families AT1G54100 77.083 2.21e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa3g3208 Tub 9.9e-31 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3208 K19600 - gmx:100803500 263.848