Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3188 ATGATGGATCCACATCTCAATGGGTTTTGTGGTTCCACAAATGAGATCCGGTTTGGGAATCAATCTTTGCCTGTTCTTCAGAATCAGAGATTTGAAAATGGTTTCTTTGATCAAATTGGTTCCGATTTGGTGCCAGCTGATTATACACCATCTTCGACAATAACGTCAGTTTCGACTCACGAGGAACCGTCTCCGGATGACTGTGAATTTTCTGATGCGGTTTTGAATTACATTAATAACATCCTTATGGAAGAAGATATGGAAGATAAGACATGTATGCTTCAAGATTCTTTAGATCTTCAAATTGCTGAGAAATCGTTCTATGAAGTAATAGGCGAAAAGTACCCGGTTTCGGTTTCGCCATTAGGACAACTTACAAGTCTTTGTAATCAAAATGAGTATGTTGGAGATAGTAACTTCTTTGATGATTATGGTACTCGTGTTGATGATGGTGATCTTAGTTGCATATTTACAAATAATTCTTTGCGCGGAAACTCGAGAGATGTTAAATTTCCTCATCCCGATTTTCAAGGAAATAGTGTTTCACAATCGTCTTATAGTTCTACAAATAGCGTAAAAAGTACCGTGGAAGGGCTTTTGGATTCTCCGGACAGTATTTTACATGTTTCTGATCAGAATAGCGGGAGTCAACCGATTTTGCAATTTCAAAAGGGCGTTGAGGAGGCTAATAAGTTTCTTCCTAGTGGAAATGGCCTCTTTCAAAATTTCGATGTTGCTAAGTTTTCGATACTAGAGCCTGAAGTGGCGAAACATGAATTATCAGTTAAGGTGGTGAAGAGTGAGAGAGAGTCCTTTCTTTCTAAGGGAAGGAAGCATCATTACGACGATGAGGGAGATGTCGAAGAAAATAGAAGCAGCAAGCAAGCGGCGATTTACTCAGAACCTATGTTGAGGTCAAATCTGATGGATGCGATCCTGCTTCATAGTTTAGGAGATGGTAAGAAGCATTTTACGGCTCGTCGCGAGGCATTGCAAACTAAGAACAATATGGTGCCAAGTAATAAATCGAAAGCTCGTACTAGTGGAAAAGGACGAGGTAAAGGTAAAAAACAAAACGGAAAAAAGGAAGTGATTGATTTGAGAACACTGCTTGTTCTTTGTGCACAAGCTGTTGCAGCAGACGACCATAAAAGTGCGCACGAATTGCTAAAGCGGATCAGGCAGCACTCGAACCCTTTCGGAGATGGAAATCAGCGGTTGGCTCATATATTTGCCGATGGCCTTGAGGCACGTTTGGCTGGTACTGGAAGCCAAATTTATAAAGGACTAATCAGTAAAAGAACATCTGCTGCCAATTATCTGAAAGCTTATCATCTGTACCTTGCCGCTTGCCCTTTTCGAAAGATGACTAGTTTCGTCTCAAATGTTACTATAATGGACTCTGCGGCAAGTTCAACGAGGGTCCATATTGTAGATTTCGGCATCCTCTATGGCTTCCAATGGCCTACCTTTATACAAAGACTTTCGTTACGTTTGGGAGGACCACCAAAGCTTCGGATTACAGGAATAGACTTTCCACAACCCGGTTTCAGGCCTGCAGAGAGAATTATAGAGACCGGTTCGCGCTTGGCAGCATATGCTGAAACTTTTAAAGTTCCATTTGAGTATAATGCCATAGCGAAAAAGTGGGAGACCATTCAGCTCGAGGAACTCAAGATCGACAAAGACGAATACCTTGTTGTAACCTGTTTTTATCGCGGTAAAAACTTGCTGGATGAATCCGTCGTAGTTGACAGTCCAAGGAACAAATTCCTCAATTTGGTAAGGAGGATCAAGCCTGATATCTTCATTCATGGCATTATGAACGGAGCCTTTAACGCGCCTTTCTTTGTCACTCGGTTCAGAGAGTCGTTGTTTCACTTCTCTTCACTTTTCGATATGCTAGAAAGTATTGTGCCTCGCGAGGATTGGGAAAGGATGCTAATTGAGAAAGAGATATTCGGGAAGGAAGCATTGAATGTTATAGCTTGTGAAGGTTGTGAGAGAGTAGAGAGACCAGAGACATATAGGCAGTGGCAAGTTCGTATTCTCCGAGCCGGGTTTTCACAACAGACTTTCGGCAAAAACACCGTAGAAAGGGCGGTGGAGAAAGTAAGGTCTAGCTACCACAAAGACTTTGTCATCGACGAAGATAGCAAGTGGTTATTGCAAGGTTGGAAAGGGAGAATCGTGTACGCGCTTTCTTGTTGGAAACCTGCTTGA 2223 0.4202 MMDPHLNGFCGSTNEIRFGNQSLPVLQNQRFENGFFDQIGSDLVPADYTPSSTITSVSTHEEPSPDDCEFSDAVLNYINNILMEEDMEDKTCMLQDSLDLQIAEKSFYEVIGEKYPVSVSPLGQLTSLCNQNEYVGDSNFFDDYGTRVDDGDLSCIFTNNSLRGNSRDVKFPHPDFQGNSVSQSSYSSTNSVKSTVEGLLDSPDSILHVSDQNSGSQPILQFQKGVEEANKFLPSGNGLFQNFDVAKFSILEPEVAKHELSVKVVKSERESFLSKGRKHHYDDEGDVEENRSSKQAAIYSEPMLRSNLMDAILLHSLGDGKKHFTARREALQTKNNMVPSNKSKARTSGKGRGKGKKQNGKKEVIDLRTLLVLCAQAVAADDHKSAHELLKRIRQHSNPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLISKRTSAANYLKAYHLYLAACPFRKMTSFVSNVTIMDSAASSTRVHIVDFGILYGFQWPTFIQRLSLRLGGPPKLRITGIDFPQPGFRPAERIIETGSRLAAYAETFKVPFEYNAIAKKWETIQLEELKIDKDEYLVVTCFYRGKNLLDESVVVDSPRNKFLNLVRRIKPDIFIHGIMNGAFNAPFFVTRFRESLFHFSSLFDMLESIVPREDWERMLIEKEIFGKEALNVIACEGCERVERPETYRQWQVRILRAGFSQQTFGKNTVERAVEKVRSSYHKDFVIDEDSKWLLQGWKGRIVYALSCWKPA* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3188 740 ProSiteProfiles GRAS family profile. 358 738 IPR005202 -
Psa3g3188 740 MobiDBLite consensus disorder prediction 333 360 - -
Psa3g3188 740 PANTHER SCARECROW-LIKE PROTEIN 9 44 739 - -
Psa3g3188 740 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 44 739 IPR005202 -
Psa3g3188 740 MobiDBLite consensus disorder prediction 273 293 - -
Psa3g3188 740 MobiDBLite consensus disorder prediction 273 291 - -
Psa3g3188 740 Pfam GRAS domain family 367 738 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3188 Psa-Chr3 269102410 269107471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3188 66 739 GRAS Transcription Factor Family AT2G37650 52.685 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa3g3188 GRAS 4.2e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3188 - - ccaj:109816616 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3188 3 269102410 269107471 Psa3g3188 3 269102410 269107471 ECH
Psa3g3188 3 269102410 269107471 Psa7g4926 7 431072977 431075047 ECH