Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3180 ATGGGAATGATTGTAGAAGTTGAAACCGTCGATGAAGACGACGACGTTTTGATTCCACCGCCTAATTTCTCCATGGTAGAAGATTGCATTTACCGATCTAGCCTTCCTCACCCTTCCAGTTTTCCTTTCCTTCAGACGCTAAACCTTCGCTCCATCATATACTTGTGTCCTGAACCCTATCCGGAGGAGAATTTGGAGTTTCTTAAATCACAGAATATTCGTTTATTTCAATTTGGAATTGAAGGGAAAACGGAAGTTTCTTTATCCTATTCTCAGTATGATTCTATATTGGAGGCTTTGAAAGATTTTACTTG 314 0.3949 MGMIVEVETVDEDDDVLIPPPNFSMVEDCIYRSSLPHPSSFPFLQTLNLRSIIYLCPEPYPEENLEFLKSQNIRLFQFGIEGKTEVSLSYSQYDSILEALKDFT 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3180 104 Gene3D Protein tyrosine phosphatase superfamily 16 104 IPR029021 -
Psa3g3180 104 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Psa3g3180 104 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Psa3g3180 104 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Psa3g3180 104 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 12 101 - -
Psa3g3180 104 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 91 IPR029021 -
Psa3g3180 104 Pfam Tyrosine phosphatase family 17 98 IPR004861 -
Psa3g3180 104 PANTHER TYROSINE-PROTEIN PHOSPHATASE 12 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3180 Psa-Chr3 268780217 268781129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3180 3 101 Protein tyrosine phosphatase (PTP) family AT3G02800 63.636 3.08e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3180 K18045 - gmx:100785746 150.214