Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3178 ATGGAACCAGACAAAAACGAAAGTAACATGAACAATAGTATGAATGAAAACAAAAATGGAGGTGATGGAAACATTGTATCAGATCCGAGAGGAGAGAGGTTTTTCGATTTTCCATGCAAAAGAAGCTTAGCTGAGAGAAGAGGTTTCAATAAAAATGCAACAATAACCCCTTTGGTTTCGCTTCCAGCTTGTTCACCGCATCTCACAATACCGCCGGGAATTAGTCCAGCCGCATTGCTTGACTCCCCCGTCATGCTTCCTAATTCTCAGGTCATGCCGTCTCCCACCACGGGGAGTTTTTCAATGCTTCAACCTCCAATGCTCACTTCCATTACAAAAGACGAAGCAAACATGGATATTTCTACTTCCTCTGATTTTAATTCTAATTCTCTAAATCAGGGTTGTAATAATTATCACATGATGAATGGAGAGTATAAAGAAGACCAAATATTTGTCCAAGATCAACTACCAATAGATTTTCCATTCTCAGAAGATTTTTCAAATAACTTCTTTAAAAATAATGGATTCCTTTTTCACAATGATTTGAAACTGGAAGATTTGATGATTGATAATATTGATGTACCCATCTCTCATTCCGAAGAAGTTAGTGATGAAAGTAATCTTCTTGAAAATTCGATCCCGGTCGCGGATGATATTGGACGACAACATGTTTTAGAAGTAGAACAAAAAGAAACAGGTTATGCAACCGGAACAAAGAACACTGACGATGGTTATAACTGGAGAAAATATGGACAAAAACAAGTAAAAGGAAGTGAGTTTCCAAGAAGCTACTATAAATGTACTCAATCGACTTGTGAGGTCAAGAAAAAAGTTGAAAGATCGCATGATGGCCAGATAACTGAGATTATTTACAAGGGTAATCACAACCATGAGAGACCACATTCGAATCGTCGAGGATCAATAATACCTTTGAATGATGAGATTTCAGAAACTGCTGAAGCCAATGATAAAGTTAACTCGCGAGAAAAAGATGTGAACCATAGTTCCAAGATGAAGCTTGAAGATCAAGGAAGGACATCCCCGCCTTCTTTTACGACCGAGCATTCAAATCCTGCGAAGAGAGGTAGATCATTAGGTGTGTTTGAATCAGATGAAGCCCAAGAGAATTCTTCTGCACTTGTTAATCATGATGGTAACAAAGATGGATCCACTCAAATGGTTTTACCGAATGAAGATAGTGCGGAAGATGGTGAATCGGAATTGAAAAGAAGGAAAAAGGAAAGCTATCCGGCTGAACACCTGCTGCCTGCGAGAGCTATTCGTGAGCCGCGAGTGGTAGTCCAAATCGAGAGTGAAATCGACATACTTGATGATGGTTATCGTTGGCGAAAGTACGGGCAAAAGGTTGTCAAAGGGAATCCAAACCCGAGGAGCTACTACAAATGCACAAGTGCTGGATGTAATGTAAGGAAACATGTGGAAAGAGCTTCACACAATCTAAAATTTGTGATTACTACTTATGAGGGAAAACATAACCATGAGGTTCCAACTGCTAAGAATAACAATCACATAAACTCAAACGATTTTGGTTCACATTCAAGTGGTGCTAATGGGTTACATGGGAGTGCTGGTATCCTAAAGTCGGAAACTCATCAGCCTATTGCATCTCATTTTGATAGAAAACCCGATTTTAGCGATGAGTTTGTGCGGTCAAGTTTGATGGGAAGTTTCGCTAATGATATGAAGTTTGGACCTTCCTCCATGGCCCAAATGCCGTATTCTTCCTTGGATAATATTGTACCATATGGATGCTCCTATGGAACGAATCTCGAATGTGGTGTTGCGCCTCAAGTCGGACATATGCCCCCGATTTTCCCAGAATTTCCAATGCCGTTGCCATTGAATCTTCCTTCATCTGGAAATTTTTCTCTAGATGGAATTAATCTCAACTATGGAAAACCAATGAATTATGTTCAGTCTTACCTTTCAAATCAACAGATGAGGGACTTTGATACAGGACTCCTAAGGCCTAAAGAGGAGTTGAATGATGATGCTTTGTATACTTCATGTCCATCTTCTTTTGATCATGCAAGTTCCTCACTGAATCCACCATCAACATCACCACCACAGTCCATTTATCAAAGTCTCATGCATAACTTCCCTTCATAA 2130 0.3967 MEPDKNESNMNNSMNENKNGGDGNIVSDPRGERFFDFPCKRSLAERRGFNKNATITPLVSLPACSPHLTIPPGISPAALLDSPVMLPNSQVMPSPTTGSFSMLQPPMLTSITKDEANMDISTSSDFNSNSLNQGCNNYHMMNGEYKEDQIFVQDQLPIDFPFSEDFSNNFFKNNGFLFHNDLKLEDLMIDNIDVPISHSEEVSDESNLLENSIPVADDIGRQHVLEVEQKETGYATGTKNTDDGYNWRKYGQKQVKGSEFPRSYYKCTQSTCEVKKKVERSHDGQITEIIYKGNHNHERPHSNRRGSIIPLNDEISETAEANDKVNSREKDVNHSSKMKLEDQGRTSPPSFTTEHSNPAKRGRSLGVFESDEAQENSSALVNHDGNKDGSTQMVLPNEDSAEDGESELKRRKKESYPAEHLLPARAIREPRVVVQIESEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHNLKFVITTYEGKHNHEVPTAKNNNHINSNDFGSHSSGANGLHGSAGILKSETHQPIASHFDRKPDFSDEFVRSSLMGSFANDMKFGPSSMAQMPYSSLDNIVPYGCSYGTNLECGVAPQVGHMPPIFPEFPMPLPLNLPSSGNFSLDGINLNYGKPMNYVQSYLSNQQMRDFDTGLLRPKEELNDDALYTSCPSSFDHASSSLNPPSTSPPQSIYQSLMHNFPS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3178 709 SUPERFAMILY WRKY DNA-binding domain 238 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g3178 709 MobiDBLite consensus disorder prediction 318 416 - -
Psa3g3178 709 SUPERFAMILY WRKY DNA-binding domain 436 503 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g3178 709 MobiDBLite consensus disorder prediction 291 310 - -
Psa3g3178 709 Gene3D WRKY domain 229 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g3178 709 MobiDBLite consensus disorder prediction 402 416 - -
Psa3g3178 709 ProSiteProfiles WRKY domain profile. 236 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g3178 709 Pfam WRKY DNA -binding domain 444 501 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g3178 709 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g3178 709 MobiDBLite consensus disorder prediction 1 24 - -
Psa3g3178 709 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 35 676 IPR044810 GO:0003700
Psa3g3178 709 MobiDBLite consensus disorder prediction 370 397 - -
Psa3g3178 709 MobiDBLite consensus disorder prediction 318 341 - -
Psa3g3178 709 MobiDBLite consensus disorder prediction 342 359 - -
Psa3g3178 709 MobiDBLite consensus disorder prediction 1 22 - -
Psa3g3178 709 SMART WRKY_cls 443 502 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g3178 709 SMART WRKY_cls 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g3178 709 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 35 676 - -
Psa3g3178 709 Gene3D WRKY domain 430 496 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g3178 709 ProSiteProfiles WRKY domain profile. 438 503 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3178 Psa-Chr3 268699311 268703063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3178 11 506 WRKY Transcription Factor Family AT5G56270 39.587 9.05e-87 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa3g3178 WRKY 2.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3178 K18835 - gmx:100800211 734.947