Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3172 ATGCCATCATGCCCTCCAGGATGTCAAATTTCATGGGGAGTTAAGTATATACATCGTCTTCCGCAACAGGTAAACCATTTGCCTACTATGGGAGATTCTTCTTACGGCACACGTAAATTGCCCACATCCAATGCCTTCCCAGAATCACTTATTCCTTCAGAGGTTGGGAAACCACCTAGGCGGGCCAAACAACCAAAGGAAACTACAAGAAAGGTCAAGAAGGAGGGTAAAGATTTAAACAAGACAATGATTGCCAACAACAAAGCACTTGAATGGAAGAGTAGTCAGGAAATTATAAGCGAAAGTGACGAACTTACCAAGCAGTTAGCGGTCTCAAAGGCTGATTGGAAACCCCAGGACTTGGCACTGAACCAAGTTGCATACGACGATTCAACCATGCCAGCACCAGTGTGCTCTTGTACTGGCGTTCTCAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCCGCTTGTTTTACAACCACTTTATCGGTGTATCCACTTCCAGCAGTGCCCAACAAAAGGCATACACAAGTAGGCAGTAGGAAAATGAGTGGAAGTGCTTTTAATGAGCTGCTTAGCCGGCTTGCAGCTGAAGGACATGATCTCTCACACCCAGTTGACCTTAAAGACCATTGA 642 0.4564 MPSCPPGCQISWGVKYIHRLPQQVNHLPTMGDSSYGTRKLPTSNAFPESLIPSEVGKPPRRAKQPKETTRKVKKEGKDLNKTMIANNKALEWKSSQEIISESDELTKQLAVSKADWKPQDLALNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACFTTTLSVYPLPAVPNKRHTQVGSRKMSGSAFNELLSRLAAEGHDLSHPVDLKDH* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3172 213 PANTHER PROTEIN BASIC PENTACYSTEINE6 3 213 - -
Psa3g3172 213 MobiDBLite consensus disorder prediction 42 74 - -
Psa3g3172 213 MobiDBLite consensus disorder prediction 59 74 - -
Psa3g3172 213 SMART GAGA_bind_2 1 213 IPR010409 -
Psa3g3172 213 Pfam GAGA binding protein-like family 22 213 IPR010409 -
Psa3g3172 213 PANTHER - 3 213 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3172 Psa-Chr3 266983761 266984743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3172 1 213 BBR or BPC Transcription factor family AT5G42520 53.814 1.54e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Psa3g3172 GAGA_bind 3.9e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3172 - - mtr:MTR_1g023660 369.777