Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3163 ATGAGTAAGAGTGAAAGCTTATCTTTCAGCACCGGTGATGAAGATGTCGTGGATCTTACATCAAACAAGTATGCAACATGGGTGGTGGAGATTGTTGAGCGTACTGTTTCCATGATTGCTAGATGGCAAGGTTTTGGTTTCACTCATGGTGTGATGAACACAGATAACATGAGCATTTTGGGTCTTACTATTGATTATGGTCCATTTGGGTTTTTGGATACTTATGACCCTAAATTTACCCCAAATACCACAGACCTTCCAGGTAGAAGGTACTGTTTTGCAAACCAGCCCGACATTGGTTTATGGAATCTTGCACGGTTTACAACAACATTGGCAGCGACTCATTTAATAAATGACAAAGAGGCTAATACTTTGGAAAGATATGGATCAAGATTTATGGATGATTATCAAGACATAATGACAAAAAGTTTGGCCTCCCAAACAATTGATGACTCTTTGGTTGACAAAAGACCCAGTGTTCATCCTGAAACATACACCAAAAGATCAATTTTCTTTAGCTGGATTAAAAGTTGGTGGCCATTTCAGAAAAGCAATGCAAAGGCTGATGATTCTACTGCTTATCAGAACAAGGTGACTAGTAATTTAGAGGATTCCAAGTTACCTGAACTAGACCAACCTACTAGTAATCTTGAAAAGCCTAAGCCATTAGAACCACACCAGAATGCCGGTGGAAAGAATAGTGCTGATAGATCTCTTCTTGTTGATATTATGTATTGGGTTTCCCAAAATTCTCCGCACGCACATCTCTTTCTGATATATGGTGATAGGGACTTTGCTGGCATATTGCACCAGTTAAGAATGAACGACTATAATATCTTGCTTGCAAGTCCTGGAAAGGCTCCTGATGTTCTCCGCGGTGCAACAACTATAATGTGGCAGTGGACATCTTTGCTCAAGGGAGAAGATCTAACTGGAAAACATTTCAACCACCCTCCCGATGCGGCTGAGCAGTCAACATCTTTGCAAAATGTACACATTATGGAAATCAACGAACCTTCCTCAGGCTTAAAGGTAGGTGGAGGAGTTCCAAAGTCAGTTATAAGAAAGATCAAGGATATATTGAGATTACATCCAAAAGGCATCGTTATTACAGAACTTCGTGCAGAGCTGATAAATTGTGATGTGTCTTTGGGTAAAAGCATATTCAGATATAAAAGGCTTTCCCGCCTTCTATCATCAATACCACATGTACATCTGTTGGCGCACCAAGAAACCAAGCCTGCGGCATTCCATTGCCAAACCTACTAG 1269 0.405 MSKSESLSFSTGDEDVVDLTSNKYATWVVEIVERTVSMIARWQGFGFTHGVMNTDNMSILGLTIDYGPFGFLDTYDPKFTPNTTDLPGRRYCFANQPDIGLWNLARFTTTLAATHLINDKEANTLERYGSRFMDDYQDIMTKSLASQTIDDSLVDKRPSVHPETYTKRSIFFSWIKSWWPFQKSNAKADDSTAYQNKVTSNLEDSKLPELDQPTSNLEKPKPLEPHQNAGGKNSADRSLLVDIMYWVSQNSPHAHLFLIYGDRDFAGILHQLRMNDYNILLASPGKAPDVLRGATTIMWQWTSLLKGEDLTGKHFNHPPDAAEQSTSLQNVHIMEINEPSSGLKVGGGVPKSVIRKIKDILRLHPKGIVITELRAELINCDVSLGKSIFRYKRLSRLLSSIPHVHLLAHQETKPAAFHCQTY* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3163 422 CDD PIN_limkain_b1_N_like 226 284 - -
Psa3g3163 422 Pfam NYN domain 190 295 IPR021139 GO:0004540
Psa3g3163 422 Pfam Protein adenylyltransferase SelO 20 152 IPR003846 -
Psa3g3163 422 PANTHER EMB|CAB71880.1 136 201 - -
Psa3g3163 422 PANTHER EMB|CAB71880.1 226 411 - -
Psa3g3163 422 PANTHER LIMKAIN B LKAP 226 411 IPR024768 GO:0005777|GO:0010468|GO:1903231
Psa3g3163 422 PANTHER LIMKAIN B LKAP 136 201 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3163 Psa-Chr3 266538966 266540497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3163 226 307 C2H2 Transcription Factor Family AT5G61190 48.780 2.20e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3163 K08997 - mtr:MTR_3g095410 262.307