Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3139 ATGTCTTATAGCTATTTCCCCATTACTTTCCAAAGAAAAATGGAGTACACCCAAAACCCTAATAAATCTGAGCAAATAAGATGGAGCTCAGATGATAGTCCAGCACAAGCTAGATCCTATTCTTGCACTTTTTGCAAGAGAGGATTTTCAAATGCTCAAGCATTAGGAGGCCACATGAATATCCATAGAAGAGATAGAGCCAAGCTCAAACAACAATCATCCGAAGAAAACTTGCTTTCTTTGGATATCTCAATCAAGAATACAAATGATCATGTTGATTTGGAAGAGAACCATGAAACTCAAAGAGGAAAGTTAGTTTCCACAAAAGAACTTCCTCGTAGTTCTTCATTTGTTGATATAAAAGGAAGTGGTGGTGTCACACATAGGATTGAAGAGAATAAATGTGATTTAGACCTTGAACTTAGGTTAGGTTATGAGCCAATAGGTTCTTCAACATTGAGCACTCGATCATTCTTTTGA 480 0.3667 MSYSYFPITFQRKMEYTQNPNKSEQIRWSSDDSPAQARSYSCTFCKRGFSNAQALGGHMNIHRRDRAKLKQQSSEENLLSLDISIKNTNDHVDLEENHETQRGKLVSTKELPRSSSFVDIKGSGGVTHRIEENKCDLDLELRLGYEPIGSSTLSTRSFF* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3139 159 PANTHER TRANSCRIPTIONAL REGULATOR TAC1 14 154 - -
Psa3g3139 159 SUPERFAMILY beta-beta-alpha zinc fingers 37 66 IPR036236 -
Psa3g3139 159 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Psa3g3139 159 Gene3D Classic Zinc Finger 17 102 - -
Psa3g3139 159 PANTHER OS07G0101800 PROTEIN 14 154 - -
Psa3g3139 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3139 Psa-Chr3 265153693 265156011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3139 14 152 C2H2 Transcription Factor Family AT3G09290 37.931 3.54e-22 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g3139 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3139 - - lja:Lj1g3v3443990.1 180.259