Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3102 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGATCATTTGCTTAAGAAATGTATACAACAATATGGTGAAGGAAAGTGGCATAGGGTTCCTCTTTTGGCTGGTCTAAACAGATGCCGAAAGAGTTGTAGGCTAAGATGGCTGAATTATCTTCGTCCTAATATCAAACGAGGAAACTTTGCTGAGGAGGAAGTGGAAATGATTGTCAAACTCCACAAATTATTAGGAAATAGGTGGTCCTTAATTGCGGGAAGGCTACCAGGAAGAACAGCCAATGATGTGAAAAACTATTGGAACTGCCATCTAAGCAAAAAACTAAATGCTCTAGAAGCTGATCAAGAAGCTGATCAAGAAGGATCACAAATATCCAAAGATGTTGAAATCATTAGGCCACAACCAAGAAACATCGCTTCAAGCTCGGCCAAAAAAAGGGGCCTAGGAGAGTCACAAACCGACCAAGCTCTAGTTCAACAAGAGAATGACACAACAACAATTGATGCTGATGGAAAGAATCATTTGGTTGAAACACAACAAGACATGATGATGTATTCATGCTTGGACCAACAAGGTATGGTTGGTGGTGGTGAGTTTCCAATGGATTTTCAGTTAGAAGGATTTGAAGCTATGGTAAATGGAGGAGAAGGTTGTAGTAGTAGTAGTCAATGGAATTGGGATGATTTGCTCTTAGATATGGATTTGTATAATGATTTTTCTTCTTAG 717 0.3961 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNALEADQEADQEGSQISKDVEIIRPQPRNIASSSAKKRGLGESQTDQALVQQENDTTTIDADGKNHLVETQQDMMMYSCLDQQGMVGGGEFPMDFQLEGFEAMVNGGEGCSSSSQWNWDDLLLDMDLYNDFSS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3102 238 Gene3D - 57 126 - -
Psa3g3102 238 SMART sant 55 103 IPR001005 -
Psa3g3102 238 SMART sant 2 52 IPR001005 -
Psa3g3102 238 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Psa3g3102 238 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Psa3g3102 238 MobiDBLite consensus disorder prediction 113 169 - -
Psa3g3102 238 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Psa3g3102 238 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 235 - -
Psa3g3102 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Psa3g3102 238 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Psa3g3102 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Psa3g3102 238 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Psa3g3102 238 MobiDBLite consensus disorder prediction 132 169 - -
Psa3g3102 238 CDD SANT 58 101 IPR001005 -
Psa3g3102 238 Gene3D - 4 55 - -
Psa3g3102 238 PANTHER MYB TRANSCRIPTION FACTOR 5 235 - -
Psa3g3102 238 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3102 Psa-Chr3 262252388 262254916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3102 5 140 MYB Transcription Factor Family AT1G66370 57.447 4.53e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g3102 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3102 K09422 - gmx:100798101 337.806