Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3099 ATGTCATCTTTACAGATGACCCATGTTGATTTAGAGCAAGGAAATCATCATCATCATCATGCTAGTTCTGTTGTTGGAAGTGATGTGAGTGGTGAAGGAAGTTTATGTTTCTCTGATGCTGATGATGGTTCAAGCTATTCTCGTTTCTATTCAACAAATGGTGGTTCATATGATGATTACTCTTTTGCTTGTGTTTCTGATGATCCTGAGCTTGGAGGTGGTGGTGGTGGTGGTGTTCAGGATTCTGCTAGAGTTTCCTCTGTCACTGATTGTTCTGTTGAAATTAGAATTGGGGTTCCTGAGATTAAGGTGCATTTGGCTAAAGTTGAGAAAGATTGTAGGATTTGTCACATGGGTTTGGAAAGTGAGAGTCATGAATCTGGTTCTCCTATTGAATTGGGTTGTTCTTGTAAAGAGGATTTAGCTGCTGCTCACAAAAACTGTGCTGAAGCTTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCGGTTGCGCGGAATGTTTATAGTGCAAACGAGGATTCGACAGAGCATGTGGTTGACAGTAACAATACTACCGCATCTTCCACGCTCTCAACTGCTGCGCCTACACCAGAAACTCAAAGATTTTGGCACGGCCATCGCTTCTTGAATTTTCTCCTTGCTTGGTATCTTGGGGTACTTGAAATCTGGTATGATTTTGCTGGTACATTAAAGGAGCTAATTAATGACTCTGGTGCAATAGAATTGCTAAATTGGTCCAAGACTAAGGGAAAGGTACACCTATACATATTCTACCATATTTTTCAACCTGATATAGTAGACGTAGTTGATGTCCAACTTGTACTAACTTATCTCCAACCCACTGAACAACAAACTGAGGGCCAACCTGATATACCTGACACTGACACCCTGCCTAAGATACCTGACATTGACACCCTGCTTGAGATACCTAAACAAAATGCAAAAAAAAATGGGAGTGGCCTTAACGAACAAAGGGATGATAGTGCATTAGGGTGCAAGTTTGATGACTCTGATGATGAAGTATTAAATGATGGAATTGACGAGGTCTTCGTAGGAGTGTGA 1074 0.4097 MSSLQMTHVDLEQGNHHHHHASSVVGSDVSGEGSLCFSDADDGSSYSRFYSTNGGSYDDYSFACVSDDPELGGGGGGGVQDSARVSSVTDCSVEIRIGVPEIKVHLAKVEKDCRICHMGLESESHESGSPIELGCSCKEDLAAAHKNCAEAWFKIKGNRTCEICHSVARNVYSANEDSTEHVVDSNNTTASSTLSTAAPTPETQRFWHGHRFLNFLLAWYLGVLEIWYDFAGTLKELINDSGAIELLNWSKTKGKVHLYIFYHIFQPDIVDVVDVQLVLTYLQPTEQQTEGQPDIPDTDTLPKIPDIDTLLEIPKQNAKKNGSGLNEQRDDSALGCKFDDSDDEVLNDGIDEVFVGV* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3099 357 PANTHER ZINC FINGER, RING-CH-TYPE 5 218 - -
Psa3g3099 357 PANTHER OS01G0850200 PROTEIN 5 218 - -
Psa3g3099 357 ProSiteProfiles Zinc finger RING-CH-type profile. 105 171 IPR011016 GO:0008270
Psa3g3099 357 Pfam RING-variant domain 113 164 IPR011016 GO:0008270
Psa3g3099 357 MobiDBLite consensus disorder prediction 317 338 - -
Psa3g3099 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 176 IPR013083 -
Psa3g3099 357 CDD RING_CH-C4HC3_MARCH 113 165 - -
Psa3g3099 357 SMART ringv_2 112 165 IPR011016 GO:0008270
Psa3g3099 357 SUPERFAMILY RING/U-box 110 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3099 Psa-Chr3 261988947 261993643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3099 79 230 C3H Transcription Factor Family AT5G05830 52.903 1.64e-48 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3099 - - gmx:100808666 327.791