Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3062 ATGGCTCAAGGTTTTGAACACTATCATATCCCGCAACAAAGCAGAAGAGAAAAACTTCGATTCTTATCTCAAAACCAATCATCTTTCATCGAATCTTCAACTACCCTTAACCCTAGTTCCACACCTTTACCTTCTCTCTACGACCCTTCATTCATTTCATCAGATTTCTCACCTTCCACCAACCAAACAATTGAGGCTATCAGCACTAACCCTTTTCTTTATCCAACATACAACGATGGTGGTAACACTAACAGTGAAGTTATGTTGCTGAAATCTGAACCTCTATCTTTATCTTTATCATCTCAACAGAATAACCAGACTCAGATGAATGTTCATCATCCTTTAGAGGCTAACCTTCAGAGATATGGGTCTGTTGTTGTTAACGGAAGTGGTGAGGTTACGAGGAACACGGTTCCGTTAGGACCGTTTACGGGCTATGCATCGGTTTTGAAGGGATCGAGGTTTTTGAAACCTGCACAGCAATTATTGGATGAGATATGTGATGTTGGAGTTCGTGTTGAGAAGATTGTTCCTGCTGGTGATTCATCGTTGATGGAAAATCCTATTCAGGAGAGGAATGGAATTGTTGATGATGATGATATTGAGGGTAGGAAGAACAAGTCTAGACTAATCAACGTGCTAGATGAGATTTGCAAGAGATACAGACATTACTATCAGCAGATTCATGCAGTAATAACTTCATTTGAATGTGTTGCCGGTCTCGGTAACGCCGCTCCTTATGCAAGTTTTGCTATAAATGCCATGTCCAAACATTTTAGAGGCTTGAAGAATGTGATTACTAACCAGCTTCAGTTTATCGGAAAGTCGAATTTTCCTATAAACTATACAAAGGACGAATCTCCAAGGTTTTACAACAGCGACAGAAGCCCTTACAGTCGAAGGCCAGAGTTTCTCGAACACGTCCAACAACCTGTTTGGCGACCGCAGAGAGGACTCCCTGAGCGCGCTGTGAGTGTTCTCAGGGCATGGTTGTTTGAACACTTTCTCCACCCTTATCCTACTGATACCGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGCAACCAGGTCTCTAATTGGTTTATAAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAGGAAATACACATGCTTGAATCACAACAATCTCAAAAGGAACCATCACAAAGAGAAGAACTTCACCGGAAAAACTTAAGTGATAACAACATTGCCGAGAATCAATCTACCTCCATAGAAAACTTCCACGACATCTCTTATAAACGAACTAGAAACGAGCTTCACAATATGCCGGTGATGAATCAGAGTATTGCAAGCAATCAAGAAGTCGGTAGTGTTGGAGTGAGCATGATGAATAAGGGAGCAACAAGCAACGGTGTCTCTCTCACGCTTGGCCTACATCAAAACCATGGAATTGGGCTGTCCGAGCCCTTCGACATGAGTGCTGCTCAACGTTATGGTCTTGCAGTTCAACCCGAAAGCTATGCTGCGAGTGGTTTTCAGTTGCAGAATAGACAGTTTGGGAGGGATTTTATTACAGGCCAACTTTTGCATGACTTTGTAGGATGA 1575 0.4222 MAQGFEHYHIPQQSRREKLRFLSQNQSSFIESSTTLNPSSTPLPSLYDPSFISSDFSPSTNQTIEAISTNPFLYPTYNDGGNTNSEVMLLKSEPLSLSLSSQQNNQTQMNVHHPLEANLQRYGSVVVNGSGEVTRNTVPLGPFTGYASVLKGSRFLKPAQQLLDEICDVGVRVEKIVPAGDSSLMENPIQERNGIVDDDDIEGRKNKSRLINVLDEICKRYRHYYQQIHAVITSFECVAGLGNAAPYASFAINAMSKHFRGLKNVITNQLQFIGKSNFPINYTKDESPRFYNSDRSPYSRRPEFLEHVQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQSQKEPSQREELHRKNLSDNNIAENQSTSIENFHDISYKRTRNELHNMPVMNQSIASNQEVGSVGVSMMNKGATSNGVSLTLGLHQNHGIGLSEPFDMSAAQRYGLAVQPESYAASGFQLQNRQFGRDFITGQLLHDFVG* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3062 524 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 501 - -
Psa3g3062 524 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 76 501 - -
Psa3g3062 524 CDD homeodomain 313 374 IPR001356 GO:0003677
Psa3g3062 524 Gene3D - 316 378 - -
Psa3g3062 524 ProSiteProfiles 'Homeobox' domain profile. 310 373 IPR001356 GO:0003677
Psa3g3062 524 MobiDBLite consensus disorder prediction 382 404 - -
Psa3g3062 524 SMART prehox3 144 268 IPR006563 -
Psa3g3062 524 SUPERFAMILY Homeodomain-like 315 380 IPR009057 -
Psa3g3062 524 Pfam Homeobox KN domain 330 369 IPR008422 GO:0003677|GO:0006355
Psa3g3062 524 MobiDBLite consensus disorder prediction 388 402 - -
Psa3g3062 524 SMART HOX_1 313 377 IPR001356 GO:0003677
Psa3g3062 524 Pfam Associated with HOX 149 267 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3062 Psa-Chr3 259754999 259757967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3062 1 524 Homeobox Transcription Factor Family AT5G02030 45.000 5.43e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Psa3g3062 POX 8.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3062 - - mtr:MTR_7g065050 736.873