Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3023 ATGCTTCAGATTCGGCTTAGCAAGACTTCTGCCTCTGATGGGTCGGCAGGGGTGAAGCAGTCACCGGTTGAGACTGTTACAGTTGCGTGCCCTGACCATCTAGTTCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTACACCTTCTACTGTTTCCCTTGTTAGGAATGTGGGTCGCAGATCCCGCCGTCAGCTTGGTGAGCGAGTTCATTTCTGTGTTCGATGTGATTTCCCGATTGCTATTTATGGGAGGCTGAGTCCTTGTGATCATGCTTTCTGTCTCGATTGTGCTAGAAGTGATTCACTGTGCTACCTGTGTGACGAACGAATCCAGAAGATTCAGACGGTCAAAGTGATGGAAGGAATCCTAATATGCGCCGCACCTCATTGTCTCAAGTCATTCTTTAAGAAAGTTGAGTTTGAATCTCATATCCATGAGAACCACGCCAATCTTGTTCGCTCCAATGCAGATAAAGAAGATGGAAATGAGTCAGAGGCACAAAGTGTTAGGCAACCTGCGGCCTCAGATTCCACAGCTCGAGGCCCCCAAAGGCAAGTCTTTTCTCCGGGTTCAAATTCTCAACCACATGATCTGGAAGATAGAACTCGTCGGCAGCCAGGAAGAGATCAAACTCCTTCAAGGCCAACAATGCAGCAAAAGCCACCATTTTTTGGCCAACAACAACATCACCCTTCAGAAACAATGTCTGGTTCTATCGGAGGTATGCAACAGGGCTTTCATCAACAAAGTTTTGACATGCCGCAGCAGCATCCCCCACAAGAACCTTCTCAGTTTACCGACAGGCTGCAATCAGTTGGTCCAGATAACTCATTTCCTGAGTATCCAACAATGCACCCTGGACAATCCGCCAATATCCCCCCACACTCGAACCCAATGCTGAACCCACCTTTGCCATTCGCTTATCCCTCTTACCCCCAAGACCGAGCTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGACTCAGCTTCTGATATGGGTGGAGACCCAAATTCATTAATGGGTTTCCCACAAGGTGGCCCAAATTTTCAAGGAAATTATTCCCAGCAATGGAATGCAGCAGGTGTTCCATTTGAACAAGCACAGGGTGGTGGTATGGTTGTGGATCCAAGGGATACAAAAGGATTATTGGCACCACCACAGTCCATGCACCTCCCACCACCGCCGCCACCACCAGCCCACATGTTGAAACAGAACAACTATTCTGTTGAGCACGGACAAGATGGTCAAGGTTATGGTTGGCAGCATGATAGTCGTGACAGCTTTAGCAGCCAAGGCTAA 1308 0.4839 MLQIRLSKTSASDGSAGVKQSPVETVTVACPDHLVLADLPVAKGIGTPSTVSLVRNVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCDHAFCLDCARSDSLCYLCDERIQKIQTVKVMEGILICAAPHCLKSFFKKVEFESHIHENHANLVRSNADKEDGNESEAQSVRQPAASDSTARGPQRQVFSPGSNSQPHDLEDRTRRQPGRDQTPSRPTMQQKPPFFGQQQHHPSETMSGSIGGMQQGFHQQSFDMPQQHPPQEPSQFTDRLQSVGPDNSFPEYPTMHPGQSANIPPHSNPMLNPPLPFAYPSYPQDRAQPFYAAPYDMPRQDSASDMGGDPNSLMGFPQGGPNFQGNYSQQWNAAGVPFEQAQGGGMVVDPRDTKGLLAPPQSMHLPPPPPPPAHMLKQNNYSVEHGQDGQGYGWQHDSRDSFSSQG* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3023 435 MobiDBLite consensus disorder prediction 209 235 - -
Psa3g3023 435 MobiDBLite consensus disorder prediction 151 235 - -
Psa3g3023 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 410 IPR040383 GO:0016567|GO:0061630
Psa3g3023 435 MobiDBLite consensus disorder prediction 151 165 - -
Psa3g3023 435 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Psa3g3023 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 410 - -
Psa3g3023 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Psa3g3023 435 MobiDBLite consensus disorder prediction 390 404 - -
Psa3g3023 435 MobiDBLite consensus disorder prediction 166 195 - -
Psa3g3023 435 MobiDBLite consensus disorder prediction 378 435 - -
Psa3g3023 435 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Psa3g3023 435 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3023 1 431 C2H2 Transcription Factor Family AT5G01160 43.177 1.70e-104 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3023 K15685 - gmx:100817582 675.241