Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3002 ATGAACTTCAACACTTCATGTGTAATCTCCAACAAAATAGCATTCAAATTCATCTATAGTTTTCTCTTATACATCACCAAATATCATTACACTTCAACTGCATCATCAACCTTGCATGGAAATGAAACTGATCTACATGCTTTACTAGACTTCAAGGCTAGAATAACTCAAGATCCATTTCACACACTCAGTTCATGGAATCATTCCATCCATCACTGCAACTGGTTAGGAATCACTTGTAACATCAACAATGGAAGACTCATACATATCATCCTTCCAGACATGGCACTATCTGGAACTCTTTCACCATCCATAGGAAATCTTACATACCTCACAAAACTCAACCTTAGAAACAGTAGCTTCCATGGAGAGTTTCCTCAACAAGTTGGAAATTTATTGTATCTTCAACATCTGAATATTAGTTATAACTCTTTTGGTGGCACCATTCCAGGTAATCTAAGTCACTGCATAGAGTTAACTATATTGAGTTCTGGTCATAACAATTTCACAGGAAAATTTCCAACATGGATAGGAAATTTTTCTTCTTTATCTTTACTTAACCTTGCTGTGAACAATTTCCATGGAACCATACCAAATGAGGTTGGGAAGTTATCAAGCCTAACACTTTTCGCGATAAATGGAAATTACTTGTATGGAAAGATTCCTACTTCAGTTTTCAATCTTTCTTCCTTGTACTTTCTCACCTTCTCCGAAAACAATCTGCATGGTGATTTACCTTCTGATGTTGGTTTTACTCTTCCTTATCTTGAAACATTCGCCGGTGGAGTCAATCGTTTTACTGGAACAATACCTGAATCACTTTCAAATGCTTCAAGATTGGAAATTCTTGATTTTGCTGATAATAGTCTCGTTGGAACACTTCCTAAGAACATAGGAAGGTTGAATCTGTTGACAAGACTCAATTTTGATAGCAATAGGCTTGGAAATGGGAAAGATGGTGACTTAGATTTTATTGCTTCATTGATTAATTGTACTGTTCTTGAAGTTTTAGGTCTTGCTGATAATAATTTCGGAGGAGAATTACCGAAGTCGATAGGTAATCTTTCAACACAGTTGAATGAACTTGCATTAGGTACAAATTCTATATATGGAAGTGTCCCTATTGGAATAAGTAACCTTGTTAACTTGACAAGTTTGGGATTGGAAAACAATATCCTAAGTGGTTTTGTTCCTTACACAATAGGCATGCTTCAAAAGTTGGTTGATTTAGAATTGTATAACAACAGTTTTTCTGGTGTGATTCCTTCCTCCATAGGAAACTTGAATAGATTAACAGTGCTACTAATAGATGATAACAGTTTTGAGGGAACTATACCAGAAAGTATTGGAAATTGTCGAAACTTGTTGATGCTAAATTTGAGCCATAACAAGCTCAATGGTACTATACCAAGACAGGTATTTTCCTTGTCTTCTCTTTCAATATACTTAGACCTGTCTCATAATGCTCTCATAGGGTCCTTGCCTTTTGAAGTAGGTAATCTAATTAATCTAGAAGAGTTGGATTTATCAGACAACAAATTGTCGGGCGCAATTCCGTCCTCGCTTGGAAGCTGTGCTAGTTTGGAAGGGCTGCATATGCAGGGTAACTTTTTTGAAGGAAACATTCCTTCATCTGTACAGAATTTAGGAGGTATACAAGATATTGATCTGTCATGCAATAACTTATCTGGGAAGGTTCCTGAATTTCTCGGTGAGATCAAAGGGCTAATGCGTCTCAATCTTTCTTACAACGATTTCGAGGGAGAATTACCGATGAACGGAATCTTCCAAAACGCAACATCCTTTTCGATTGATGGAAACATCAAGCTTTGTGGTGGTGTCTCGGAATTAAACCTACCTTCATGCACTATCAAAAAAATTCATAGCCCGAAAGTGACTATCCCTTTAGGTAGTGCACTAGTATTTGTATTCTTTCTATCTTGTTTTGTAGCAATCTTTATGAGAAAAAGATTAGGAAAGAAAACTTCAAGAGAAAGAGTTACTACAAAGGAATTGGAACTGAATATTTCCTACTCGGAAATTGTGAAGTGCACCGGTGGATTCTCCGAAGATAACTTGATTGGCAAGGGAAGTTTTGGTTCTGTATACAAAGCAACTCTTTTAAGCGATGAAGCAGTTATTGCTATAAAAGTGTTGAATCTTGAACAAGTAGGAGCTTCAAAAAGCTTCATTGATGAATGCAATGTTCTGAAAGTTATAAGGCACCGCAACCTACTCAAGATTATAACTGCTATCTCAGGTATTGATCATCAAGGTAATGACTTCAAAGCACTCGTGTACGAATTCATGTCGAATGGATGTCTAGAAGATTGGTTGCATCCTAAGAATGAGACAAAAACACTGTCTTTTGTCAAAAGACTGAACATAGCGATTGATGTTGCTTGTGCACTTGAATATCTTCACCATTCTTGCGAAACTCCTATTGTTCATTGTGACATAAAGCCGAGCAATGTACTTCTTGACAAAAATATGGTAGCCCATGTTGGTGACTTTGGTTTAGCTACATTTCTGTTTGAAGAATCATGTGATTCTCCTAAACATTCAACCATGACAGCTAGCTTAAAGGGCTCCATTGGATACATCGCACCAGAGTATGGAATAGGTGGACGCGTGTCTGCAGTTGGAGATGTTTACAGCTATGGGATACTACTGCTAGAGATTTTCACAGGAAAAAGGCCAACTGGTGAGATGTTTGAAGGTGGCATGGGAATTCAACAATTTACAGCCTCGGCTTTACCGAATCATGTCATAGATATAACTGATCCAACATTGTTACATAATCAAGAACTCGATGGATATAATGAAGATTATAGTGATGAGATAGCATTAAGGTATGAGAATGAAGCTGGAGAGTTGTCTAGTATGGAGAATTGTTTGGTTTGTGTGTTGGAGATTGGAGTGTCATGCTCTTCAACTTCACCAAGTGAAAGAATGCATATGACTGAGGTTGTCAACAAACTGCAAGTGATCAAGAATTCATATTTAAGACTTAATGAGTTAATTTAG 3027 0.37 MNFNTSCVISNKIAFKFIYSFLLYITKYHYTSTASSTLHGNETDLHALLDFKARITQDPFHTLSSWNHSIHHCNWLGITCNINNGRLIHIILPDMALSGTLSPSIGNLTYLTKLNLRNSSFHGEFPQQVGNLLYLQHLNISYNSFGGTIPGNLSHCIELTILSSGHNNFTGKFPTWIGNFSSLSLLNLAVNNFHGTIPNEVGKLSSLTLFAINGNYLYGKIPTSVFNLSSLYFLTFSENNLHGDLPSDVGFTLPYLETFAGGVNRFTGTIPESLSNASRLEILDFADNSLVGTLPKNIGRLNLLTRLNFDSNRLGNGKDGDLDFIASLINCTVLEVLGLADNNFGGELPKSIGNLSTQLNELALGTNSIYGSVPIGISNLVNLTSLGLENNILSGFVPYTIGMLQKLVDLELYNNSFSGVIPSSIGNLNRLTVLLIDDNSFEGTIPESIGNCRNLLMLNLSHNKLNGTIPRQVFSLSSLSIYLDLSHNALIGSLPFEVGNLINLEELDLSDNKLSGAIPSSLGSCASLEGLHMQGNFFEGNIPSSVQNLGGIQDIDLSCNNLSGKVPEFLGEIKGLMRLNLSYNDFEGELPMNGIFQNATSFSIDGNIKLCGGVSELNLPSCTIKKIHSPKVTIPLGSALVFVFFLSCFVAIFMRKRLGKKTSRERVTTKELELNISYSEIVKCTGGFSEDNLIGKGSFGSVYKATLLSDEAVIAIKVLNLEQVGASKSFIDECNVLKVIRHRNLLKIITAISGIDHQGNDFKALVYEFMSNGCLEDWLHPKNETKTLSFVKRLNIAIDVACALEYLHHSCETPIVHCDIKPSNVLLDKNMVAHVGDFGLATFLFEESCDSPKHSTMTASLKGSIGYIAPEYGIGGRVSAVGDVYSYGILLLEIFTGKRPTGEMFEGGMGIQQFTASALPNHVIDITDPTLLHNQELDGYNEDYSDEIALRYENEAGELSSMENCLVCVLEIGVSCSSTSPSERMHMTEVVNKLQVIKNSYLRLNELI* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3002 1008 Pfam Protein tyrosine and serine/threonine kinase 692 994 IPR001245 GO:0004672|GO:0006468
Psa3g3002 1008 Gene3D Phosphorylase Kinase; domain 1 668 769 - -
Psa3g3002 1008 Gene3D Ribonuclease Inhibitor 41 195 IPR032675 -
Psa3g3002 1008 SUPERFAMILY L domain-like 357 612 - -
Psa3g3002 1008 ProSiteProfiles Protein kinase domain profile. 688 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g3002 1008 SUPERFAMILY RNI-like 92 418 - -
Psa3g3002 1008 SUPERFAMILY Protein kinase-like (PK-like) 671 997 IPR011009 -
Psa3g3002 1008 Pfam Leucine Rich Repeat 503 525 IPR001611 GO:0005515
Psa3g3002 1008 Pfam Leucine Rich Repeat 135 156 IPR001611 GO:0005515
Psa3g3002 1008 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Psa3g3002 1008 Gene3D Ribonuclease Inhibitor 196 251 IPR032675 -
Psa3g3002 1008 Pfam Leucine rich repeat 430 490 IPR001611 GO:0005515
Psa3g3002 1008 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Psa3g3002 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Psa3g3002 1008 Gene3D Ribonuclease Inhibitor 252 319 IPR032675 -
Psa3g3002 1008 Gene3D Ribonuclease Inhibitor 320 629 IPR032675 -
Psa3g3002 1008 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 159 998 - -
Psa3g3002 1008 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 39 174 - -
Psa3g3002 1008 Gene3D Transferase(Phosphotransferase) domain 1 770 1005 - -
Psa3g3002 1008 ProSiteProfiles Leucine-rich repeat profile. 503 525 IPR001611 GO:0005515
Psa3g3002 1008 SMART serkin_6 688 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g3002 1008 SMART LRR_typ_2 501 525 IPR003591 -
Psa3g3002 1008 SMART LRR_typ_2 453 476 IPR003591 -
Psa3g3002 1008 SMART LRR_typ_2 380 403 IPR003591 -
Psa3g3002 1008 SMART LRR_typ_2 428 452 IPR003591 -
Psa3g3002 1008 SMART LRR_typ_2 404 427 IPR003591 -
Psa3g3002 1008 PRINTS Leucine-rich repeat signature 455 468 - -
Psa3g3002 1008 PRINTS Leucine-rich repeat signature 501 514 - -
Psa3g3002 1008 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 159 998 - -
Psa3g3002 1008 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 39 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3002 Psa-Chr3 251355466 251358856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3002 39 1003 Receptor kinase-like Gene Family AT3G47570 44.004 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Psa3g3002 PK_Tyr_Ser-Thr 4.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g3002 - - gmx:100785230 1412.13