Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2995 ATGGGGTTTGTTCTCAAAAGAAGGAAGAAGGAAGAAAAAGGAAATAGAGAGATCATGCGAAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCATTTTGCCAATACACTAGCTTCTGATTATCCAAGTGATCCAGATGGTGCCTGCCTTCAAATGAGATTGTCCTATAGCCCAACTGCCCATTTCTTCCTCTTTTTTGTTCAGTGGACTGACTGTTACCTCGCCGGAGCCTTAGGATTGCTTAAAATTTTTATCTACAAGGCATATAAAGATGGGAAGACAACCATGTCTATTCATGAAAGAAAAGCCAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCGTCTTTATTGCAACTTCATCAAGGAATCACTGATGTTGATGATAGGAAACAAAAACATCTATGTGCTACTAAGTACAAGCGTAAAGAATTGGTAAACAGAGGAAAGAGCTCCGAAATTGATGCAGAAGAAGATGAAGAAGAGTGTGATATTTGTTGCATGGAGATGAACACCATGGTTGTGTTGCCCAGTTGCAATCACTCAATGTGTATGAAATGCTACCGAGACTGGCATGGAAGATCGGAATCTTGCCCGTTCTGTCGGGACAGTCTTAAACGAGTAAACTCCGGTGATCTTTGGATGTACTTGAGCAGCAAAGAGATAGATGATCTTGCTTCAATCAACAAGGAGAATTTGAAAAGACTATTTATGTACATAGAAAAGCTGCCTCTTATTGCTAGACCCTACATTCATGTCATATCATCACAACTTCTTGTTGCTTCATAG 795 0.4013 MGFVLKRRKKEEKGNREIMRKSFKDSLKALEADIHFANTLASDYPSDPDGACLQMRLSYSPTAHFFLFFVQWTDCYLAGALGLLKIFIYKAYKDGKTTMSIHERKASLKEFYGVVFPSLLQLHQGITDVDDRKQKHLCATKYKRKELVNRGKSSEIDAEEDEEECDICCMEMNTMVVLPSCNHSMCMKCYRDWHGRSESCPFCRDSLKRVNSGDLWMYLSSKEIDDLASINKENLKRLFMYIEKLPLIARPYIHVISSQLLVAS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2995 264 Pfam Zinc finger, C3HC4 type (RING finger) 162 209 - -
Psa3g2995 264 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 15 263 - -
Psa3g2995 264 SMART ring_2 165 203 IPR001841 -
Psa3g2995 264 SUPERFAMILY RING/U-box 159 209 - -
Psa3g2995 264 PANTHER RING FINGER PROTEIN 41, 151 15 263 - -
Psa3g2995 264 ProSiteProfiles Zinc finger RING-type profile. 165 204 IPR001841 -
Psa3g2995 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 234 IPR013083 -
Psa3g2995 264 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2995 Psa-Chr3 251157254 251158460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2995 108 208 C3H Transcription Factor Family AT5G01960 31.776 1.14e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2995 K25840 - gmx:100814293 390.963