Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2994 ATGACAAAGGGCAAGGGTACAGGAAAGACTTCAAGGGAAGTACTGAAACCAGTTGATGACCGAAAAGTAGGAAAGCGAAAGGCTGTTTCTAAACCCGAGAAGAGTGCACCGAAGCCTAAGAAGGAGAAAGCTAAGAAAGATCCCAACAAACCAAAAAGGCCTCCCAGCGCTTTCTTCGTCTTCCTTGAGGATTTCAGAAAGACTTTTAAGGCAGAAAATCCTAATGTGAAGGCTGTATCGGCTGTTGGGAAGGCTGGAGGAGAGAAATGGAAATCCTTGACTAAGGCTGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGTTGAATATGAAAAACTTATGAACGCTTATAATAACAAAGCGGCAAGTTCAGTCGAGGATGATGAGGAGGAATCAGACAAGTCCAAATCTGAAGTTAATAACGAAGATGAAGCAAGTGGAGAGGATGACCACCAAGATGACGATGATGAAGACGACGAGGACGAAGATGACGAGGAAGACGATGATTGA 516 0.438 MTKGKGTGKTSREVLKPVDDRKVGKRKAVSKPEKSAPKPKKEKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLMNAYNNKAASSVEDDEEESDKSKSEVNNEDEASGEDDHQDDDDEDDEDEDDEEDDD* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2994 171 MobiDBLite consensus disorder prediction 125 144 - -
Psa3g2994 171 Gene3D High mobility group box domain 34 137 IPR036910 -
Psa3g2994 171 CDD HMGB-UBF_HMG-box 51 116 - -
Psa3g2994 171 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 51 120 IPR009071 -
Psa3g2994 171 MobiDBLite consensus disorder prediction 83 104 - -
Psa3g2994 171 MobiDBLite consensus disorder prediction 1 55 - -
Psa3g2994 171 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 161 IPR031061 -
Psa3g2994 171 MobiDBLite consensus disorder prediction 121 171 - -
Psa3g2994 171 Pfam HMG (high mobility group) box 51 120 IPR009071 -
Psa3g2994 171 MobiDBLite consensus disorder prediction 90 104 - -
Psa3g2994 171 SMART hmgende2 50 121 IPR009071 -
Psa3g2994 171 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 2 161 - -
Psa3g2994 171 MobiDBLite consensus disorder prediction 9 52 - -
Psa3g2994 171 SUPERFAMILY HMG-box 42 122 IPR036910 -
Psa3g2994 171 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2994 Psa-Chr3 251155769 251156855 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Psa3g2994 HMG_box 2.7e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2994 K25507 - gmx:100499704 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2994 3 251155769 251156855 Psa3g2994 3 251155769 251156855 ECH