Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2984 ATGGCAGAGCCACATTCCGCCTCCGCCATTCCTTCTTCTTCCGCCGCCAACGCTGAAGCTTCTCAGGCAGACGAAAATGCCGGAGCTTCGGAGAATCTCCCACGCGAGTCTCGGCGCGTGAGCATCACCTTTGGGAGAACCAACTTGAGAATGGCCGGTGACTCCGCGCTTGTTAGGGATGAGAAGTGGTCCTGCTTGGCTGTTATCTTCAGCTTTTGGTTCTTCGTTGCGGTGACGATGATAATGGGGGTGTATGGGTCGATGACCGTGGTTCTAGGTCCGTGTTCTTCAATTGTTTTGCAACCTAACCCTGTGTTTGTGCAATATGTGAAGGTAGAAAACTTAGAGGGGAATCCAGGACTCGTTCTTTATGGTACTTATCGATATCCACCTCTTGATGTTGTTTCCACTTGGAGAGAAACTCTTAATACATCTATTCCTTATGGCGCAGATAAGGAATGGAAATATTATTTGAATAGAGGGTCGGAAGTAAATATCTCGTATAGCGTAAGCTCTGAGAGTTCCTCTATTTATCTTGTAATTGCAGAAGGAGCTGACAGTCTCTCAATGTGGCTGGAGGACCCAACATATCCCAATACAACTCTGTCTTGGAACGTGATCCATGGAACTGGTATGATTACACAAGAAATATTCAGGTCATCGTACTATTATGTGGCCTTGGGTAATTTAGAAGATGAAGTGGAGGTTGAATTAAACCTCACTGTAAGGGCCTTTTTGCATAATACAACAAATGCTTTCTACAAATGTGCCCCGACTAGTAGCCCGTGCAGTTTAAATATTGACTTTCCTCATGGAAACAAAGCTGTTTTAGTCTCTCCTGCTCCTCAGCAGAACACATCTAATGATGAGTGGTATGTCAAACTGACCTATGGACCAAGATGGCTTACATATATTTTTGGCATAGGTGTACTGACTTTAATCATGTTTTGGGTCTTCAACTTCTTGAACAAACTTCAGTGTGCCAATGATGATAGAGTAGGATCTAGATCTGAAGGAACAGGACCAGATCGAGCCCCTTTGCTTTCTCGCAAAGATGATGATCTTTCGAGTTGGGGTTCGTCATATGATTCCATACCGCAGGATGATGAGGATCTTAACTTTCTCACTGGAGGTTCCACTGACGGGAAGTTTTTAGCTGATGGTGAGACTAGTAATAATACTCGGCGTCTTTGTGCAATTTGTTTTGATGCTCCACGGGACTGCTTCTTCCTTCCATGTGGGCACTGTGTGGCTTGTTTTGCGTGTGGAACTAGGATAGCTGAGGCAGCTGGTATATGTCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAAATTTTTACTGTGTGA 1350 0.4459 MAEPHSASAIPSSSAANAEASQADENAGASENLPRESRRVSITFGRTNLRMAGDSALVRDEKWSCLAVIFSFWFFVAVTMIMGVYGSMTVVLGPCSSIVLQPNPVFVQYVKVENLEGNPGLVLYGTYRYPPLDVVSTWRETLNTSIPYGADKEWKYYLNRGSEVNISYSVSSESSSIYLVIAEGADSLSMWLEDPTYPNTTLSWNVIHGTGMITQEIFRSSYYYVALGNLEDEVEVELNLTVRAFLHNTTNAFYKCAPTSSPCSLNIDFPHGNKAVLVSPAPQQNTSNDEWYVKLTYGPRWLTYIFGIGVLTLIMFWVFNFLNKLQCANDDRVGSRSEGTGPDRAPLLSRKDDDLSSWGSSYDSIPQDDEDLNFLTGGSTDGKFLADGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEAAGICPVCRRNMKKVRKIFTV* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2984 449 Pfam Zinc finger, C3HC4 type (RING finger) 395 443 - -
Psa3g2984 449 Pfam Domain of unknown function (DUF4793) 212 317 IPR032010 -
Psa3g2984 449 SUPERFAMILY RING/U-box 397 443 - -
Psa3g2984 449 SMART ring_2 398 436 IPR001841 -
Psa3g2984 449 PANTHER OS05G0521000 PROTEIN 12 449 IPR044586 GO:0004842
Psa3g2984 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 449 IPR013083 -
Psa3g2984 449 ProSiteProfiles Zinc finger RING-type profile. 398 437 IPR001841 -
Psa3g2984 449 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 12 449 - -
Psa3g2984 449 MobiDBLite consensus disorder prediction 7 28 - -
Psa3g2984 449 Pfam Domain of unknown function (DUF4792) 120 188 IPR032008 -
Psa3g2984 449 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2984 Psa-Chr3 250587302 250591986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2984 371 446 C3H Transcription Factor Family AT3G06140 28.947 8.82e-06 45.8