Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2968 ATGGCTTCTGGCCAAAGACAAGAAGAAGAACGATCATGGCTTTTGGAGAACGGTAATCCAAAGATCTTGAACAAGGAATCAAGACACGGACATGGCCGTAGCCGAAGAGCGCACAACATTTCTTCAGCTTCATTCCGAAAAAAATCCAAATTTACTCTCGTCTCCAATATTCGCTGGGATTCGCTTAGGAATGTCTTGGCTAACATCCAAGAGGTTATTCTTGGTACAAAGCTTTCCATTCTCTTCTGCGCCATTCCTGCTGCAATCTTAGCTCATTACTTTCGCGTTGGAAGATCATGGATTTTCATATTGAGCTTACTAGGGCTTACTCCACTTGCTGAACGTGTGAGCTTTCTTACAGAACAAATTGCTTTCTTCACCGGTCCTACAGTTGGAGGACTTCTTAATGCAACATGTGGGAATGCTACAGAACTCATAATTGCAATATTTGCTCTTAGCACCAACAAAATTGCTGTTGTCAAGTTTTCTCTTTTGGGTTCCATTCTTTCAAACCTTCTTCTTGTTCTTGGAAGTTCTCTACTTTGTGGTGGCATTGCAAATCTTAGAGTGGAGCAAAAATACGATAGAAGACAAGCAGATGTGAACTCACTGATGCTGCTATTGGCATTGTTATGCCTTTCGCTTCCAATGCTATTCACATACAGTGCTGCATCGCCTGAACTCACCGTAGAGCCTTCACTGTACTTGTCAAGAGCTTCTAGCATTGTGATGTTGGCTGCATATTTTGCTTACTTGATCTTTCAACTATGGACACATAGACAATTATTTGAAGCTGTAGATGAAGGTGAAGGTGTGAACAATGAAGCAGAAGAAGAGGCTGTGATTGGATTTTGGAGTGGATTTGCTTGGTTGGCTGGAATGACTGTGTTCATTGCTTTGTTGTCTGAATATGTGGTGGACACAATTGAGGATGCATCAGATTCGTGGGGTTTATCCGTCAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGTAATGCAGCTGAACACGCTGGAGCAATCATTTTCGCTTTCAAGAACAAGCTCGACATTTCTTTAGGTGTTGCATTGGGCTCTGCAACTCAAATTGCCATGTTTGTGGTTCCACTATGTGTTACTGTTGCTTGGGGAATGGGTGTGAATATGGACCTAAACTTCAACCTCCTTGAGACAGGTTCTCTTGCTGTGGCAATCATAGTCACATCATTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGTGTTATTCTCCTACTCTGCTACTTTGTCATTGGTGCTTGCTTCTTTGTACAAAGATTTCCCAGTTACCCAAATGAATTTCACACTCTTAAATCAGGGATTGATTCAGTTACATAG 1359 0.4187 MASGQRQEEERSWLLENGNPKILNKESRHGHGRSRRAHNISSASFRKKSKFTLVSNIRWDSLRNVLANIQEVILGTKLSILFCAIPAAILAHYFRVGRSWIFILSLLGLTPLAERVSFLTEQIAFFTGPTVGGLLNATCGNATELIIAIFALSTNKIAVVKFSLLGSILSNLLLVLGSSLLCGGIANLRVEQKYDRRQADVNSLMLLLALLCLSLPMLFTYSAASPELTVEPSLYLSRASSIVMLAAYFAYLIFQLWTHRQLFEAVDEGEGVNNEAEEEAVIGFWSGFAWLAGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVTVAWGMGVNMDLNFNLLETGSLAVAIIVTSFTLQDGTSHYMKGVILLLCYFVIGACFFVQRFPSYPNEFHTLKSGIDSVT* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2968 452 TIGRFAM caca2: calcium/proton exchanger 64 430 - -
Psa3g2968 452 TIGRFAM cax: calcium/proton exchanger 82 430 IPR004798 GO:0006816|GO:0015369
Psa3g2968 452 Gene3D - 129 284 IPR044880 -
Psa3g2968 452 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 8 437 IPR004713 GO:0006812|GO:0008324|GO:0016021
Psa3g2968 452 Pfam Sodium/calcium exchanger protein 100 257 IPR004837 GO:0016021|GO:0055085
Psa3g2968 452 Pfam Sodium/calcium exchanger protein 287 425 IPR004837 GO:0016021|GO:0055085
Psa3g2968 452 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 8 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2968 Psa-Chr3 249887006 249891965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2968 16 435 Antiporters AT2G38170 67.925 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2968 K07300 - gmx:100816231 620.928