Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2965 ATGGATATGAAGGAAGAAGAAACATGTGGTTCAATATGTTCCAAGACAAGTGTTTCAATTAATGAAGAAGGTTGTGAGTTTAGTGATGCAAATGAAGATGATCAAGAAAGTAAGCAGAACAACAATGGAGGAATAAGCTCAAGCAATAGTACTATTGAAGAGAATTCTGAAAAGAAACCATCAGTGAGACCTTATGTTAGATCCAAGTTTCCTAGACTACGTTGGACTCCTGATCTTCATTTTCGTTTTCTTCATGCTGTTCAAAGACTTGGTGGACAAGAGAGAGCAACTCCAAAATTGGTTCTTCAATTGATGAATATAAAAGGTTTAAGTATAGCTCATGTGAAGAGTCATTTACAGATGCATAGAACCAAGAAAGTAGTTGACACAAATCAAGAGAGAAATGTTTATAATCTCACCCAAATTCCTATGCTTCAAGGCTATATTCCAAATCAAAGTTCATCATATAGATGTGGATATGGTGATGCTTCTCTTTCTATGTATGAAAACATGGTGCATATGAGCTCAATAAATGAACCTAGAGCTGATTTCTATGGAAAAATGATTGAGAGAACCAATAATAAGAGCCATAGTATTTTCCAAGTCGATTCTTCTGATTTTCGAGAACCATTACCAACAAGTAAAGTTCATGAGTCGAATGAAAATCTCCTCTCATTTTGTGGCAATGAATCTTTAAGAGATGATCTCCATGCTCAGCCAATAGCACAAGACTTCATGCAAAATGATATTTTGCCTGCAAATCAAGTTGAGTTGAAGACACTAAAAAGAAAAGCTTCAGATTTGGATCTTGATTTGGATCTTTCACTTAAATTAAGTTCGAGGAATATCATTGATGATCATGATCATGAGAAGCAAGGGAGTATAGAGGATATTCATGAAGTTCAGAGCAATTTATCTCTCTCTTTGTATACTCAATCCTCTTATGATGAATCTAAGGAGCAAGAGAAAAGAGTCAATATAGGTTTGGATCTAACCATATGA 1002 0.3483 MDMKEEETCGSICSKTSVSINEEGCEFSDANEDDQESKQNNNGGISSSNSTIEENSEKKPSVRPYVRSKFPRLRWTPDLHFRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMHRTKKVVDTNQERNVYNLTQIPMLQGYIPNQSSSYRCGYGDASLSMYENMVHMSSINEPRADFYGKMIERTNNKSHSIFQVDSSDFREPLPTSKVHESNENLLSFCGNESLRDDLHAQPIAQDFMQNDILPANQVELKTLKRKASDLDLDLDLSLKLSSRNIIDDHDHEKQGSIEDIHEVQSNLSLSLYTQSSYDESKEQEKRVNIGLDLTI* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2965 333 MobiDBLite consensus disorder prediction 37 55 - -
Psa3g2965 333 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 71 126 IPR006447 GO:0003677
Psa3g2965 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 10 317 IPR044848 GO:0003700
Psa3g2965 333 PANTHER - 10 317 - -
Psa3g2965 333 SUPERFAMILY Homeodomain-like 71 125 IPR009057 -
Psa3g2965 333 MobiDBLite consensus disorder prediction 24 63 - -
Psa3g2965 333 Gene3D - 71 127 - -
Psa3g2965 333 Pfam Myb-like DNA-binding domain 73 122 IPR001005 -
Psa3g2965 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 127 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2965 Psa-Chr3 249818611 249820875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2965 62 127 G2-like Transcription Factor Family AT2G42660 75.758 8.52e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa3g2965 Myb_DNA-binding 1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2965 - - cam:101498576 355.91