Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2902 ATGGATTGCAACATTCCTATTCCTATCTCTTCCACTTCAGGGTCATCTTCAAAGGCAAAAGAGAAGAAAAAGGCTGTGAAGAAAAGCAAAGGATCATCGGTGAAACTTTCAACTGATCCACAAAGTGTTGCTGCGAGAGAAAGAAGACATAGAATCAGTGACAGGTTTAAGATTCTTCAGAGTATGGTCCCTGGTGGAAGTAAAATGGACACTGTTTCTTTGTTGGAAGAAGCTATTCATTATGTTAAGTTTCTTAAGACACAGATTTTGTTTCATCAAACAATGATTAACTTTGTTGATGATGTTGATCATGAGGCTTTCTCACCAATGTTCCTTCCTAATGATAACACCATTGATCAACATAACATTTTAGGTTCGGTTGAATCTGGACAGAATTTACCACAGTTGCCACTTGAGCAGTTTTGTTTTCAACAAGGTGATGAAGATGGCAAAAACATGTTTAATGCTAGTATGAAATATTAG 483 0.3665 MDCNIPIPISSTSGSSSKAKEKKKAVKKSKGSSVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSLLEEAIHYVKFLKTQILFHQTMINFVDDVDHEAFSPMFLPNDNTIDQHNILGSVESGQNLPQLPLEQFCFQQGDEDGKNMFNASMKY* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2902 160 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983
Psa3g2902 160 Pfam Helix-loop-helix DNA-binding domain 46 85 IPR011598 GO:0046983
Psa3g2902 160 MobiDBLite consensus disorder prediction 1 47 - -
Psa3g2902 160 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 15 112 IPR045843 GO:0003700|GO:0006355
Psa3g2902 160 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 15 112 - -
Psa3g2902 160 MobiDBLite consensus disorder prediction 1 16 - -
Psa3g2902 160 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 95 IPR036638 GO:0046983
Psa3g2902 160 SMART finulus 42 91 IPR011598 GO:0046983
Psa3g2902 160 CDD bHLH_AtIND_like 37 96 - -
Psa3g2902 160 Gene3D - 35 94 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2902 Psa-Chr3 244085307 244086643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2902 26 116 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.000 2.97e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g2902 HLH 7.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2902 - - gmx:113000114 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2902 3 244085307 244086643 Psa3g2902 3 244085307 244086643 ECH