Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2893 ATGGCTTCCGGTTTCTCAACAATGACAGAGAAGAAAAAGGTTTTATTCATAATGGGTGCAACTGGAACTGGAAAAACTAAACTTTCTATTAACCTAGGTATTCAATTCCCTTCTGAAATCATTAACTCAGACAAAATTCAAGTCTATAAGGGTCTTGACATTGTGACGAATAAGATACCAGAATCCGAGCAATGTTCGATTCCACATCACATGTTAGGCATCATAAATGATCCTGATTATGATTTCACTGTGAATGAATTCTGCAAGAAAATGGTTGAAATCCTAGATGTCATTGTCGAAAATGGACATCTACCTATTATCGTAGACAAAAGAGTTAATGAAATGGTTGACGCAGGTCTTATTGATGAAATTAGAGACTTTTTTGTCCCTGGAGCAGATTGCACAATGGGGATTAGAAGAGCAATTGGTGTTCCTGAACTTCAACGTTATTTTGAGATAGAAAATGCTGAAG 472 0.3623 MASGFSTMTEKKKVLFIMGATGTGKTKLSINLGIQFPSEIINSDKIQVYKGLDIVTNKIPESEQCSIPHHMLGIINDPDYDFTVNEFCKKMVEILDVIVENGHLPIIVDKRVNEMVDAGLIDEIRDFFVPGADCTMGIRRAIGVPELQRYFEIENAE 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2893 157 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1 108 IPR039657 -
Psa3g2893 157 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 108 155 IPR039657 -
Psa3g2893 157 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 107 157 - -
Psa3g2893 157 Gene3D - 11 106 IPR027417 -
Psa3g2893 157 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 108 155 - -
Psa3g2893 157 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 1 108 - -
Psa3g2893 157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 110 IPR027417 -
Psa3g2893 157 Pfam IPP transferase 47 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2893 Psa-Chr3 242974860 242975451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2893 42 157 C2H2 Transcription Factor Family AT2G27760 32.759 1.34e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2893 K10760 - gmx:100817288 219.55