Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2890 ATGATATATACCTTCTTCATTGCTCTTCTTTTCTATTTTCATCCCGTTGTTTCTCTCTCCTCCGACGGCCTCGCTCTTCTAACGCTCAAATCTGCCGTCAACGGCGACGGTGCAGCCGCATTTTCTGATTGGAATGAAGACGACCTTACCCCGTGTCACTGGTCCGGCATTAGTTGTGCAAACATCTCCGGTGAGTCGGAAGCTCGTGTCGTCGGTATAGGTCTCGCCGGGAAAGGCCTTCGTGGTTACCTCCCGTCGGAGCTTGGAAACTTAATCTATCTCCGCCGCTTGAGTCTCCATACTAACCTCTTCCATGGCTCCATTCCTGTTCAGCTTTTCAATGCTACCTCCCTCCACAGCATCTTCCTCCATGGGAATAACCTCTCCGGTAATCTCTCTCCCTCCGTCTGCAATCTTCCCCGTCTCCAAAACATTGACCTCTCCGAAAATTCACTCGCCGGCACAATCCCGGAGTCTCTCGGAAACTGTGCACAACTCCAGCGGCTCATCCTCGCGAGGAATAATTTCTCCGGCGACATTCCGGTGACTCCATGGATGAAGCTTAAGAATCTAGTTCAGCTGGACCTTTCTGCGAATCTTCTGGAAGGTTCGATTCCAGACGAAATTGGCTACCTTAACTCTCTCACCGGAACCCTAAACCTCTCATTCAACCATCTATCAGGTAAAGTTCCCAAGTCTCTAGGAAAGTTGCCGGTGACGGTTAGCTTCGACCTTCGCAGCAACGATCTAAGTGGAGAAATTCCTCAAACGGGGTCGTTTTCGAACCAGGGACCCACCGCGTTTCTTAATAATCCGAAACTATGCGGGTTTCCTCTGCAAAAACAGTGCACCGGTTCCGCTCCGAGTGAACCAGGGACTAGTCCTGGTTCAGCTCGACAACATGTGAACCGGTCTAAGAAAGGGTTGAGTCCCGGTTTAATTATTATTATAACAGTAGCTGATGCTGCTGGAGTAGCTTTAATTGGGCTTCTTGTTGTCTATGTGTATTGGAAAAAGAAAGATAACTCCAATGGGTGTAGTTGTACCTTGAAGAGGAAATTTGGTGGCAGTGGAAATAATGAAAAATCAAGTTTCTGCTGTTTTTGTTTGTCTTTAGGGTGTGTTAAGGGGTTTAAGAGTGATGATTCGGACATCGAAGAGAGTGAGAAAGGAGGAAGAGAAGGTGGTGGTAGAGGGGAAGGTGAAGGAGAAGGAGAATTGGTGGCAATTGATAAAGGTTTTAGCTTTGAACTTGATGAGTTATTAAGAGCTTCCGCATATGTGTTAGGGAAAAGTGGGTTAGGGATTGTGTATAAGGTAGTGCTTGGAAATGGTGTTCCTGTGGCTGTGAGGAGATTAGGGGAAGGTGGTGAACAAAGGTATAAGGAGTTTGCTGCTGAAGTTCAAGCTATTGGGAAAGTGAAACATCCGAATATTGTGAAGTTGAGAGCTTATTATTGGGCTCATGATGAAAAGCTTTTGATAAGTGATTTCATTTCCAATGGCAATTTGGCTAATGCTCTTAGAGGGAGAAATGGCCAACCATCTCCAAATCTTTCATGGTCAATCAGGCTGAGAATAGTCAAAGGAACAGCCAGAGGTTTAGCTTATCTCCACGAATGCAGTCCAAGAAAATTTGTTCACGGTGACCTCAAACCCTCCAATATCCTCCTCGACGCAGACTTCCAACCCCTCATTTCTGATTTCGGCCTTAACCGGCTGATCAGCATCACCGGCAACAATCCCTCCACCGGCGGTTTTATGGGTGGAGCTCTTCCTTACTTGAAGTCATCACAAACAGAACGAATCAACAACTATAAAGCCCCCGAAGCTAGAGTACCAGGCTGCAGACCCACCCAAAAATGGGATGTGTATTCGTTTGGTGTTGTATTACTTGAATTGCTCACTGGTAAATCCCCAGATTCTTCTCCCGGAGCATCAACTTCCGTGGAAGTACCTGACTTGGTAAGATGGGTTAAGAAAGGATTTGAACAAGAAAGCCCTTTATCCGAAATGGTCGATCCATCACTTCTTCAAGAAATACATGCCAAGAAAGAAGTACTTGCTGTATTTCATGTAGCACTATCATGCACCGAGGGAGACCCTGAGGTCAGGCCTAGAATGAAAACTGTTTCTGACAATCTTGAAAGAATTTGA 2157 0.4618 MIYTFFIALLFYFHPVVSLSSDGLALLTLKSAVNGDGAAAFSDWNEDDLTPCHWSGISCANISGESEARVVGIGLAGKGLRGYLPSELGNLIYLRRLSLHTNLFHGSIPVQLFNATSLHSIFLHGNNLSGNLSPSVCNLPRLQNIDLSENSLAGTIPESLGNCAQLQRLILARNNFSGDIPVTPWMKLKNLVQLDLSANLLEGSIPDEIGYLNSLTGTLNLSFNHLSGKVPKSLGKLPVTVSFDLRSNDLSGEIPQTGSFSNQGPTAFLNNPKLCGFPLQKQCTGSAPSEPGTSPGSARQHVNRSKKGLSPGLIIIITVADAAGVALIGLLVVYVYWKKKDNSNGCSCTLKRKFGGSGNNEKSSFCCFCLSLGCVKGFKSDDSDIEESEKGGREGGGRGEGEGEGELVAIDKGFSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAHDEKLLISDFISNGNLANALRGRNGQPSPNLSWSIRLRIVKGTARGLAYLHECSPRKFVHGDLKPSNILLDADFQPLISDFGLNRLISITGNNPSTGGFMGGALPYLKSSQTERINNYKAPEARVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSPGASTSVEVPDLVRWVKKGFEQESPLSEMVDPSLLQEIHAKKEVLAVFHVALSCTEGDPEVRPRMKTVSDNLERI* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2890 718 Gene3D Transferase(Phosphotransferase) domain 1 499 718 - -
Psa3g2890 718 SMART serkin_6 427 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2890 718 Gene3D Ribonuclease Inhibitor 184 285 IPR032675 -
Psa3g2890 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Psa3g2890 718 ProSiteProfiles Protein kinase domain profile. 423 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2890 718 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 718 - -
Psa3g2890 718 CDD STKc_IRAK 429 718 - -
Psa3g2890 718 Gene3D Phosphorylase Kinase; domain 1 406 498 - -
Psa3g2890 718 SUPERFAMILY L domain-like 21 280 - -
Psa3g2890 718 SUPERFAMILY Protein kinase-like (PK-like) 428 715 IPR011009 -
Psa3g2890 718 Pfam Protein kinase domain 428 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2890 718 Gene3D Ribonuclease Inhibitor 19 183 IPR032675 -
Psa3g2890 718 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 2 718 - -
Psa3g2890 718 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2890 Psa-Chr3 241750960 241756612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2890 15 718 Receptor kinase-like Gene Family AT1G67510 69.680 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa3g2890 Pkinase 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2890 - - gmx:100795021 1163.29