Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2878 ATGAAGATTGATACTGTTTCTGGAGAAAGGAAATCACGCAAGAGACGCAGTGGTGGAAGAAGGGACTCAGTGGAAGATACTCTTGAGAAGTGGAAGAAATACAATAAGCAACAGCAACAAAAACTTGGATGTGGAGATAATGGAGCTGAAAAGATTCACAAAGCTCCTGCAAAAGGTTCAAGAAAAGGGTGCATGAGAGGTAAAGGTGGTCCTCAGAATTCAGATTGCAATTTCAGAGGAGTTAGACAGAGGATTTGGGGTAAATGGGTTGCAGAGATTCGTGAGCCTATCAATGGTAAACATATTGGTGAGAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCTACAGCACATGAAGCTGCTCTTGCTTATGATAAAGCAGCTAAGGCTATGTATGGACCTAGTGCTCGTTTGAACTTTCCTAGTGGATCACCACCTTCATCGTCAAGTGGTGGTTCTGTTGATTCTTTGAATGGTGAGGAGGATCTTGCAAAAGTTGAAGAGTTGGAGGGTAATCTTCATCAGTCTGATGAAGAGAATAAGATTCTTTCTGAAGATTTTGTTGCTGATGACGACTCGGTAGAGGAATTGAAGGACGGGATAATAGCTGGCACTGTCCAATGTAAAACCAATAAGAGATGTAAGAAAATTGTTCATCAAGAGTCCTACAAGAATGTTAAATCTGAAACACGTGGAGAAAACGAACTGCTAGAGAGTGAATCAGAGAAGGTTTTGGAGAATTCTGGCATGGGTGGAGAGTGTTATCATGTACAGAAGGAGTATATAGATTTAGCCATGAACTCAGGAGCTGATTGTGGATCTTCTGATATAGCAGAAAATGGGATTCTGGTGAAGAGTGAGGAAACAATCAGAGGATCAGTGGAGGATTTGGAATCCTTTGAGTTGAACTGCAACAACAATTTCCTTGGAAACCTGCACAATATGCTTCCAGATATCAATCCAAGACCAGATTCTGAGTATTCTAACATCAAAACCGACGCTTCTCTTGCAAAGACACATAAGAATGGACATTTTGATGAGATGAAAAATGAGCTTAAGGGATTGGAATGCAAGCTGAGAGGCCAATCTATTGATTGCGAAAATGACGAGGCTCAGAGATTACCTTGCGTGCAGGGAATTCGTTTGTTTGGTGGTGGCAGTGTTGGACCAATTGAAAGAATGTCCCAAGTTGAGGCTTTGAACAACAATACTAATAAAAGCAGTAATTTAAAAGAGAGAGGAAATAATGGAAGTGCACCTCATGGATTTAGTTCAGAGCAAAGTAGGAAGCTGAGTGATCTTTCTCAACAGCTCCAGAAATTGGGAGGTTACTTGCCTGAAAATTGGAATAATATGCAGTTTGCAGATCTTGAAGTTGGTTATGATTATAGTTTCTTAAAACCTGATTATGATTTTGGCTTACTAGAAGAGCAGAAGTTGCTAGATATATGTTTTTCACATATAGGATCTTAA 1473 0.4005 MKIDTVSGERKSRKRRSGGRRDSVEDTLEKWKKYNKQQQQKLGCGDNGAEKIHKAPAKGSRKGCMRGKGGPQNSDCNFRGVRQRIWGKWVAEIREPINGKHIGEKANRLWLGTFSTAHEAALAYDKAAKAMYGPSARLNFPSGSPPSSSSGGSVDSLNGEEDLAKVEELEGNLHQSDEENKILSEDFVADDDSVEELKDGIIAGTVQCKTNKRCKKIVHQESYKNVKSETRGENELLESESEKVLENSGMGGECYHVQKEYIDLAMNSGADCGSSDIAENGILVKSEETIRGSVEDLESFELNCNNNFLGNLHNMLPDINPRPDSEYSNIKTDASLAKTHKNGHFDEMKNELKGLECKLRGQSIDCENDEAQRLPCVQGIRLFGGGSVGPIERMSQVEALNNNTNKSSNLKERGNNGSAPHGFSSEQSRKLSDLSQQLQKLGGYLPENWNNMQFADLEVGYDYSFLKPDYDFGLLEEQKLLDICFSHIGS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2878 490 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 360 - -
Psa3g2878 490 Coils Coil 21 41 - -
Psa3g2878 490 CDD AP2 76 140 IPR001471 GO:0003700|GO:0006355
Psa3g2878 490 Coils Coil 166 186 - -
Psa3g2878 490 Gene3D AP2/ERF domain 77 142 IPR036955 GO:0003700|GO:0006355
Psa3g2878 490 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 360 - -
Psa3g2878 490 Pfam AP2 domain 76 133 IPR001471 GO:0003700|GO:0006355
Psa3g2878 490 Coils Coil 345 365 - -
Psa3g2878 490 MobiDBLite consensus disorder prediction 1 36 - -
Psa3g2878 490 MobiDBLite consensus disorder prediction 402 429 - -
Psa3g2878 490 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Psa3g2878 490 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Psa3g2878 490 ProSiteProfiles AP2/ERF domain profile. 77 141 IPR001471 GO:0003700|GO:0006355
Psa3g2878 490 SUPERFAMILY DNA-binding domain 77 141 IPR016177 GO:0003677
Psa3g2878 490 MobiDBLite consensus disorder prediction 1 76 - -
Psa3g2878 490 SMART rav1_2 77 147 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2878 Psa-Chr3 241063051 241065621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2878 13 168 AP2-EREBP Transcription Factor Family AT2G40340 52.761 9.09e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g2878 AP2 8.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2878 - - cam:101505842 648.662