Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2874 ATGGGTAAGAAACAGAAGCAGCCGAAGATCATTCTTCCGCCGGACCTCCCGCCGGAGATTCCAGACGACGAAGTTGAGTATTCCGACGACGACATCAAATTCGTCAAGGAAAATCGCGCCTTCGCTTCTTTGCTTTCCACTTTGGACACTCAATCAATCACCAAGCATGTTACACGTGTTGCTGATGCGAAAGATGATGCTTTGGAGAAAATGTATGAGCAACGTATGCAAAAGAATGCTCTCAAGAAAGAAAAAGAAGAAACAGGTCTGCAGGTTGATCGAGTAGATGCTCTTCCGGTCAAGACTTTGGATGGAAAAATCTATTTCCGGACAGCTACAAAGACGGCAGCAGTAAATGGTCCAAGTGAAGAGGAAACTGGAGAGGACGGCAATGCAGACAAAGGTTTATTTAAGCTAACTAAGGCTGAAAAGAGAGCCAAGCTTAAGAAAATTCGGAAAGAGGGGAAAAAACAAGACAAAGAGGTGGCTAAAGAAGAAGTGGAAGAAGCACCACAGGCAGCAGCTTTGGCCGAGGTTGAAGAAGATCTTAAAGTTGAAGAGGCATTTGAAAGTAAAAAGTTTAAGCTTGCAGAGTTGGGAAATGCCCTGTTAACAGACCCAGAGTCCAATATTAAAGATCTGAAGGAGATGGTACAACTATCTAAAGATAATGATCGCACCATTGTTAAACTTGGACTTCTATCCCTCTTGGCTGTTTTCAGAGATATTATTCCTGGCTATCGAATCAGGCTTCCTACTGAAAAGGAACAAGAAATGAAGGTTTCAAAGACTATTAAAAAGATGCGTTTTTATGAGTCAACTCTCCTCTCTGCATACAAGGCTTACTTGCAAAGGTTGATAGCCTTAGAAAAGCAGCCTTTATTTCAGCTTGTTGCAGTTCGCTGTATTTGTTCGTTGCTTGAATCAAATCCTCATTTCAACTTTCGTGAAACCTTGTTGAATGCGGCTGTCAGAAACATAAGCTCCTGTAATGATGCCATAAGACAACTTTGCTGTTCCACAATTAAGTCACTCTTTACAAATGAGGGTAAACATGGTGGTGAAGCTACTGTGGAGGCTGTGCGGTTGATTTCTTATCAGGTTAAAGATCATAATTGCCAGCTGCACCCTGATTCCATTGAGGTTTTCTTATCTCTATCATTTGATGATGATCTTGGGAAGTCAGAAAAGACAGATAGGGATCAGAAATATAAAAACAAGAAAGACAAGAAAAGAAAACACATGGAGGGATCAAACCAGTTGCCGGAAAATGACAGAAAGAAAAGTAGGAAAGAGTCAATTTCTAAGACTAGAGAGGAGGTTGAAGCTGATTACAAGGCTGCTTCCTTTACCTTGGATGCTATGGAGAAGAGACAGATGCAAACACAAACACTCTCTGCTGTATTTGAGATGTACTTTCGCATTTTGAAGCATACAATGCAGTCCATAGTTCCCAGGCCTGAAGGAAACCCTGGGGTACTTTCGGCTGCAGTGGGAGGGGAACCCCACCCATTGCTTGATCCCTGTCTGAAGGGACTGGCGAAATTCGCACACTTAATTGACCTTGATTTCCTGGGTGACCTAATGAACCATTTGAAAATTCTTGCTTCTGGAGGTAGAAACTCAGGCAACACATCTGAGAAGTTTCCTAAATGTCTGACTGTATCTGAACGCCTCCAATGTTGCATCGTTGCTTTTAAAGTGATGAGAACCAATCTTGATGCCTTGAATGTTGATTTACAGGACTTCAATGTCCATCTTTACAATCTCTTACTTGAATACAGACCTGGAAGAGATCAAGGAGAGGTGTTAGCAGAGGCTTTGAAGATAATGCTGTGCGACGATAGGCAGCATGACATGCAAAAAGCTGCTGCATTTATAAAACGTCTGGCTACATTGTCACTGTGTGTTGGATCTGCAGATTCTATGGCGGCCTTGGTCACAGTAAAGCACCTTCTTCTGAAAAATATCAAGTGCAGAAATTTATTGGAAAATGACACTGGAGGGGGCTCTGTTTCTGGCACAATTCCGAAATATCTACCATATTCGACAGATCCTATTTTAAGCGGCGCCCTTGCCTCTGTACTTTGGGAACTGAGTCTTTTGTCCAAACACTATCATCCAGCCATATCGACAATGGCAACAGTCCTTTCAAGCATGAGCACTGAACAAAACCAATTGTTCCTCTCCAAGTCTTCTCCTCAACTAGCTTTCAGGGACATGTCTGTTGACCAAGAACTATGCTTTGAACAAAGTGGCAGTATAAAATTAAACAACAAGAAGAGACGATCAAATGGCAATGCTACATCAGATACCATTGGTTCCACATCTGTAACGAGGTCATTTAATGAGGATGATTTACGAAGGAAATTTAGTTCCCATTTCATGATTCTTCATGAGATCAAGGAGAATGAAAGGTTGAGAAGGAAGTTGAATAAGACTGCACAATCACTTCAGCTATATGAACAATACAAGAAACAAAAAAAGAAACGATCAAAACCAAGTAAATGA 2511 0.4154 MGKKQKQPKIILPPDLPPEIPDDEVEYSDDDIKFVKENRAFASLLSTLDTQSITKHVTRVADAKDDALEKMYEQRMQKNALKKEKEETGLQVDRVDALPVKTLDGKIYFRTATKTAAVNGPSEEETGEDGNADKGLFKLTKAEKRAKLKKIRKEGKKQDKEVAKEEVEEAPQAAALAEVEEDLKVEEAFESKKFKLAELGNALLTDPESNIKDLKEMVQLSKDNDRTIVKLGLLSLLAVFRDIIPGYRIRLPTEKEQEMKVSKTIKKMRFYESTLLSAYKAYLQRLIALEKQPLFQLVAVRCICSLLESNPHFNFRETLLNAAVRNISSCNDAIRQLCCSTIKSLFTNEGKHGGEATVEAVRLISYQVKDHNCQLHPDSIEVFLSLSFDDDLGKSEKTDRDQKYKNKKDKKRKHMEGSNQLPENDRKKSRKESISKTREEVEADYKAASFTLDAMEKRQMQTQTLSAVFEMYFRILKHTMQSIVPRPEGNPGVLSAAVGGEPHPLLDPCLKGLAKFAHLIDLDFLGDLMNHLKILASGGRNSGNTSEKFPKCLTVSERLQCCIVAFKVMRTNLDALNVDLQDFNVHLYNLLLEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFIKRLATLSLCVGSADSMAALVTVKHLLLKNIKCRNLLENDTGGGSVSGTIPKYLPYSTDPILSGALASVLWELSLLSKHYHPAISTMATVLSSMSTEQNQLFLSKSSPQLAFRDMSVDQELCFEQSGSIKLNNKKRRSNGNATSDTIGSTSVTRSFNEDDLRRKFSSHFMILHEIKENERLRRKLNKTAQSLQLYEQYKKQKKKRSKPSK* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2874 836 MobiDBLite consensus disorder prediction 395 440 - -
Psa3g2874 836 Pfam Nucleolar complex-associated protein 192 282 IPR011501 -
Psa3g2874 836 PIRSF Noc3 2 815 IPR016903 -
Psa3g2874 836 Coils Coil 438 458 - -
Psa3g2874 836 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 3 782 IPR016903 -
Psa3g2874 836 SUPERFAMILY ARM repeat 214 390 IPR016024 -
Psa3g2874 836 Pfam CBF/Mak21 family 559 714 IPR005612 -
Psa3g2874 836 MobiDBLite consensus disorder prediction 413 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2874 Psa-Chr3 240877519 240885807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2874 1 811 Core DNA Replication Machinery Family AT1G79150 56.829 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2874 K14834 - gmx:100794797 1236.86