Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2852 ATGACTATGGATGATCAACATCATCATCATCATAATAACTGGGAAGTTTCTGAACTTAATGATGTTCCTAAGTTCAAATCTGTTCAACCACCTTCACTTCCTCTTTCTCAATCACCAATTTCACCTTCTTTTAACTTACCCTTTTCATCTACTTTTAGCCCAACTGATTTCTTAATCTCACCTTTCTTTCTTTCTTCTCCAAATGTTTTTGCTTCTCCAACTACTGAGGCTTTTGCTAACCAGAGCTTCAACTGGAATAAGAACAGTTTAGGGGAAGAAGACCAACAAGGTGGTGACAAGAAGGATGAGAAAAACTACTCTGATTTCTCTTTTCCAACTCAAACCAAACATGAACCTGTCTTTCAATCTTCCTCAAACATGTTTTTACCGGAACCAGTTAGGAAACAAGACATATGGAAATTCAATGAGCCTGCAAAGATAACCGATTTTTCGTCCGAAAGGACGGCAACAAAATCTGAATTCGCTTCAACTCAGAGCTTTTCCACAGAAATAGTACTAAGTAAACCAGAAACACATGGTAACTCAGTCAATGGATCTGGCTATGTTAACTATAATGCATCGCAATCTGTTAGAGAACAAAAGAGATCAGAAGATGGATTCAATTGGAGAAAATACGGACAGAAACAAGTGAAAGGAAGTGAAAATCCACGAAGTTATTACAAGTGCACGCATCCGAGTTGCTCGATGAAGAAGAAAGTTGAAAGGGATTTGGATGGACAAATTACTGAAATTGTGTATAAGGGAACTCATAACCACCCTAAGCCTCAGTCTAACAGAAGAACAAACTCTCAACCTTCTTCATCGTGCACGAACTCGGGTATTTCTGATCAATCAGCGATGGACCGTGTTTCTATACAAGAAGATTCTTCGGCATCTGTGGGCGAGGAAGAGTTTGAGCAAACATCACAAACTAGTTATTCTGGTGGAAATGACGACGCCCTTGGACCCGATGCCAAAAGATGGAAGGGTGATGTTGAAAATGATGGCTATTCCGCTGCTGGTAGTAGAACTGTTAAAGAACCTAGAGTTGTAGTTCAAACTATGAGTGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAATCCTAACGCAAGAAGCTATTACAAATGCACTGCCCCTGGTTGTTCAGTGAGAAAACACGTTGAGCGAGCTGCACATGATATCAAAGCTGTGATCACAACTTACGAAGGGAAACACAACCACGACGTACCAGCTGCACGCGGTGCTGCAGGTTACAACATGAACAGAAATTCCATGAACAACAGCATCATACCAGCACCTATTAGGCCATCAGCAGTGAACTGTTATTCAAACGCATCAAGTTTCACAAATTCACTTTATAATAAAACCGGTCTTCCTACCAACGCAAACCACGAGTCATTTCAACCAGACATGTTGCAGGGTCATGGAAGGCTTGGATATTCATCTCTCGGAAGATCAATGGATTCATCCACCAACCATTCACAATACTCAGACGCAACGTACTTAAAGGCTAAGGATGAGAGGAAAGACGACTCATTCCTTCAGTCATTTCTATCAAAAGACTATTAA 1602 0.4039 MTMDDQHHHHHNNWEVSELNDVPKFKSVQPPSLPLSQSPISPSFNLPFSSTFSPTDFLISPFFLSSPNVFASPTTEAFANQSFNWNKNSLGEEDQQGGDKKDEKNYSDFSFPTQTKHEPVFQSSSNMFLPEPVRKQDIWKFNEPAKITDFSSERTATKSEFASTQSFSTEIVLSKPETHGNSVNGSGYVNYNASQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPSCSMKKKVERDLDGQITEIVYKGTHNHPKPQSNRRTNSQPSSSCTNSGISDQSAMDRVSIQEDSSASVGEEEFEQTSQTSYSGGNDDALGPDAKRWKGDVENDGYSAAGSRTVKEPRVVVQTMSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGAAGYNMNRNSMNNSIIPAPIRPSAVNCYSNASSFTNSLYNKTGLPTNANHESFQPDMLQGHGRLGYSSLGRSMDSSTNHSQYSDATYLKAKDERKDDSFLQSFLSKDY* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2852 533 ProSiteProfiles WRKY domain profile. 198 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g2852 533 MobiDBLite consensus disorder prediction 254 320 - -
Psa3g2852 533 Pfam WRKY DNA -binding domain 362 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g2852 533 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g2852 533 MobiDBLite consensus disorder prediction 198 224 - -
Psa3g2852 533 SMART WRKY_cls 361 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g2852 533 SMART WRKY_cls 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g2852 533 SUPERFAMILY WRKY DNA-binding domain 353 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g2852 533 Gene3D WRKY domain 188 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g2852 533 Gene3D WRKY domain 348 414 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g2852 533 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 531 IPR044810 GO:0003700
Psa3g2852 533 SUPERFAMILY WRKY DNA-binding domain 199 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g2852 533 ProSiteProfiles WRKY domain profile. 356 421 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g2852 533 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 24 531 - -
Psa3g2852 533 MobiDBLite consensus disorder prediction 258 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2852 Psa-Chr3 239589668 239591760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2852 1 472 WRKY Transcription Factor Family AT2G38470 46.443 1.49e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa3g2852 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2852 K13424 - gmx:100792833 760.37