Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2767 ATGTTGTTGTTACCAGCATTGTTGGTGCAAGATCACTTTTGTGTTATAGGTTTAGTGAGTGAAGAGACTGTGAGAGGTGAGAAGGTTTTGTTGGCTGGGATTGGTGTTGCGGTTTGTGATTTGACTGATAATTTGATTTTTGAAGTTTCTAAATCTGTGGTTGGGAATGGAACTAGTAAAATTGTTGTGGAGCTTAAGGCTTTGATTGAAGCTTTCAATGCTGTTATTGCTTTGGATTTGACGCGTGTTAGTTATTATGGTGATTACTATCCACTTTTCCAATTTTTAAGTGGAATATGGCCTGCGAAACAGCGGAAGATTGCTATGCTAGTTAATCAGGTGAATCTGCTCCAAAGAAAATTTGAATACTGCAGTCCAAGGCTTGTGGCAAGACATGATCTGAAATTTGCATTAAAGCTTGCAAGAGATGCAATTGTTTCTCAGTCCAATAGGCCTGCTGAATCTAGCAGTGTAAACAGTCTGAATGAAACTTGTGTCATTTGTTTGGAGGATACTGATCATAGTCAAATATTTTCAGTTGATGCATGTCAGCACATGTATTGCTTTTCTTGCATGAAGCAACAAGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAATGCCCTCACGAGGGATGCAAGAATGAACTTCTAATTGACAGTTGCCGGAAATTCTTGACTTCTAAATTAATTGAAACCTGCAACAAACAACAAAGTTAG 720 0.3861 MLLLPALLVQDHFCVIGLVSEETVRGEKVLLAGIGVAVCDLTDNLIFEVSKSVVGNGTSKIVVELKALIEAFNAVIALDLTRVSYYGDYYPLFQFLSGIWPAKQRKIAMLVNQVNLLQRKFEYCSPRLVARHDLKFALKLARDAIVSQSNRPAESSSVNSLNETCVICLEDTDHSQIFSVDACQHMYCFSCMKQQVEVKLLHGMVPKCPHEGCKNELLIDSCRKFLTSKLIETCNKQQS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2767 239 Pfam Reverse transcriptase-like 30 144 IPR002156 GO:0003676|GO:0004523
Psa3g2767 239 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 17 236 - -
Psa3g2767 239 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 236 IPR031127 GO:0004842|GO:0016567
Psa3g2767 239 Gene3D - 23 153 IPR036397 GO:0003676
Psa3g2767 239 SUPERFAMILY RING/U-box 163 232 - -
Psa3g2767 239 ProSiteProfiles Zinc finger RING-type profile. 165 209 IPR001841 -
Psa3g2767 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 239 IPR013083 -
Psa3g2767 239 ProSitePatterns Zinc finger RING-type signature. 183 192 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2767 Psa-Chr3 231370179 231371024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2767 17 231 C3H Transcription Factor Family AT2G19610 28.767 7.44e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2767 - - gmx:100786163 355.525